EMPIAR-12925 - Complex between human carboxyhemoglobin and Staphylococcus aureus hemophore IsdH [1 micrographs - focal pairs

EMPIAR-12925

Complex between human carboxyhemoglobin and Staphylococcus aureus hemophore IsdH [1 micrographs - focal pairs - unprocessed in TIFF format]

Publication:

Hemoglobin Receptor Redundancy in Staphylococcus aureus: Molecular Flexibility as a Determinant of Divergent Hemophore Activity

Buoli Comani V, De Bei O, Pancrazi F, Gragera M, Paris G, Marchetti M, Campanini B, Ronda L, Faggiano S, Bizzarri AR, Bettati S

(---)

Related EMDB entry:

EMD-54567 EMD-54546 EMD-54565 EMD-54563 EMD-54621 EMD-54618 EMD-54620 EMD-54619 EMD-54613 EMD-54585

Deposited:

2025-08-12

Released:

2025-12-08

Last modified:

2025-12-08

Imageset size:

1.49 TB

Imageset DOI:

10.6019/EMPIAR-12925

Experimental metadata:

Download xml json

Contains:

micrographs - focal pairs - unprocessed

Image Sets

1. Unaligned multi-frame micrographs of human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3

Category:

micrographs - focal pairs - unprocessed

Image format:

TIFF

No. of images or tilt series:

11114

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.645, 0.645)

Details:

The analysed protein–protein complex exhibits substantial heterogeneity. Five distinct particle subsets were identified to describe this heterogeneity, and each subset has been deposited as a separate particle stack.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Browse EMPIAR

Sample Preparation Widget

Volume Browser

Tomo Viewer Prototype

Claim entries to your ORCiD

Talks and Tutorials

EMPIAR Quick tour

Publications

Re-use study

Statistics

EMPIAR in the news

COVID-19 Data Portal

EMDB

BioImage Archive

PDBe

EMNavigator@PDBj

PDBj

Citations

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)