EMPIAR-12609 - Scan 6 according to material & methods [972 micrographs in TIFF format]

EMPIAR-12609

Scan 6 according to material & methods [972 micrographs in TIFF format]

Publication:

Horizontal cell connectivity in the anchovy retina-a 3D electron microscopic study

Guder P, Scheungrab M, Kohnert P, Kolyfetis G, Wanner G, Heß M

BMC biology 23 (2025)

PMID: 40390032

DOI: 10.1186/s12915-025-02242-7

Related EMDB entry:

Deposited:

2025-02-28

Released:

2025-06-09

Last modified:

2025-06-09

Imageset size:

6.43 GB

Imageset DOI:

10.6019/EMPIAR-12609

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. scan 6

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

972

Image size:

(3072, 2304)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(9.04, 10.0)

Details:

FIB-SEM series of the anchovy retina (horizontal sectioning) from rod spherules (first) to cone pedicles (last)
9.04 x 9.04 x 10 nm

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Citations

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

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