EMPIAR-12250 - In situ cryo-electron tomography of the T. pseudonana diatom PyShell4 Ko and WT [multiple data sets in MRC, EER and TIFF formats]

EMPIAR-12250

In situ cryo-electron tomography of the T. pseudonana diatom PyShell4 Ko and WT [multiple data sets in MRC, EER and TIFF formats]

Publication:

A Protein Blueprint of the Diatom CO2-Fixing Organelle

Nam O, McKenzie C, Dowle A, Dowson M, Barrett J, Mackinder LCM

bioRxiv (2023)

DOI: 10.1101/2023.10.26.564148

Related EMDB entry:

EMD-51423

Deposited:

2024-08-27

Released:

2024-11-27

Last modified:

2024-11-27

Imageset size:

146.54 GB

Imageset DOI:

10.6019/EMPIAR-12250

Experimental metadata:

Download xml json

Contains:

reconstructed volumes
micrographs - multiframe

Image Sets

1. cryo-CARE denoised bin4 tomograms of T. pseudonana PyShell4 KO - Basel session

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

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2. cryo-CARE denoised bin4 tomograms of T. pseudonana PyShell4 KO - Munster session

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

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3. cryo-CARE denoised bin4 tomograms of T. pseudonana PyShell4 KO - Zurich session

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. cryo-CARE denoised bin4 tomograms of T. pseudonana PyShell4 WT

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

5. Raw frames of T. pseudonana PyShell4 KO tilt series - Basel session

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

732

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

6. Raw frames of T. pseudonana PyShell4 KO tilt series - Munster session

Category:

micrographs - multiframe

Image format:

EER

No. of images or tilt series:

183

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

7. Raw frames of T. pseudonana PyShell4 KO tilt series - Zurich session

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

471

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

8. Raw frames of T. pseudonana PyShell4 WT tilt series

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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