EMPIAR-12087 - Cryo-EM micrographs of human RYBP-PRC1 bound to H2Aub1 mononucleosome [10669 micrographs in MRC format]

EMPIAR-12087

Cryo-EM micrographs of human RYBP-PRC1 bound to H2Aub1 mononucleosome [10669 micrographs in MRC format]

Publication:

Structural basis of the histone ubiquitination read-write mechanism of RYBP-PRC1

Ciapponi MC, Karlukova E, Schkölziger S, Benda C, Müller J

Nature structural & molecular biology (2024)

PMID: 38528151

DOI: 10.1038/s41594-024-01258-x

Related EMDB entry:

EMD-17796

Deposited:

2024-05-09

Released:

2024-06-11

Last modified:

2024-06-11

Imageset size:

935.57 GB

Imageset DOI:

10.6019/EMPIAR-12087

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. Aligned multi-frame micrographs of human RYBP-PRC1 bound to H2Aub1 nucleosome

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

10669

Image size:

(None, None)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(None, None)

Details:

The micrographs are motion-corrected images of 35 raw movie frames (total exposure 54 electron per squared Angstrom). The dataset was collected on streptavidin grids; the streptavidin layer has already been removed from the micrographs deposited here.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Talks and Tutorials

EMPIAR Quick tour

Statistics

Publications

Re-use case study

EMPIAR in the news

Claim entries to your ORCiD

COVID-19 Data Portal

EMDB

PDBe

BioImage Archive

EMNavigator@PDBj

PDBj

RCSB@PDBj

EMDataResoruce@RCSB,EMDB,NCMI

Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

See all citations

Protein Data Bank Japan News

[2024-11-28]

[wwPDB] Access SDF/MOL formatted CCD files from the PDB archive

[2024-11-27]

374 new PDB entries have been released on 2024-11-27.

[2024-11-01]

A new portal integrating genome variants and protein structures has released

[2024-10-30]

[wwPDB] Deprecation of FTP File Download Protocol on November 1, 2024

[2024-10-25]

PDBj luncheon seminar at APBJC 2024