EMPIAR-12010 - Initiation factor 3 bound to the 30S ribosomal subunit in an initial step of translation [multiple data sets in MRC and MRCS formats]

EMPIAR-12010

Initiation factor 3 bound to the 30S ribosomal subunit in an initial step of translation [multiple data sets in MRC and MRCS formats]

Publication:

Initiation factor 3 bound to the 30S ribosomal subunit in an initial step of translation

Uday AB, Mishra RK, Hussain T

Proteins (2023)

PMID: 38148682

DOI: 10.1002/prot.26655

Related EMDB entry:

EMD-36619 EMD-36620

Deposited:

2024-03-24

Released:

2024-05-03

Last modified:

2024-05-03

Imageset size:

751.05 GB

Imageset DOI:

10.6019/EMPIAR-12010

Experimental metadata:

Download xml json

Compressed by PDBj:

Image formats and pixel types shown below are those of the original, non-compressed files.

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Contains:

micrographs - multiframe
picked particles - multiframe - processed

Image Sets

1. Unaligned multi-frame movies of the 30S-IF3 complex

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

4564

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.2, 1.2)

Details:

The set consists of unaligned multi-frame movies. The two sub-directories corresponds to two sets of movies, each processed seperately and then combined at the end for the final reconstruction.

Files:

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2. Polished particles of 30S-IF3 complex

Category:

picked particles - multiframe - processed

Image format:

MRCS

No. of images or tilt series:

145664

Image size:

(320, 320)

Pixel type:

16 BIT FLOAT

Pixel spacing:

(1.2, 1.2)

Details:

Particles used for the final reconstruction of 30S-IF3 map. The two subdirectories correspond to two sets of particles picked from the corresponding two sets of movies. Each set was processed seperately and combined at the end for final reconstruction.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

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Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)