EMPIAR-11843 - Cryo electron tomography image- and volume-series subtomograms of chloramphenicol-treated mycoplasma pneumoniae [multiple data sets in MRCS and MRC formats]

EMPIAR-11843

Cryo electron tomography image- and volume-series subtomograms of chloramphenicol-treated mycoplasma pneumoniae [multiple data sets in MRCS and MRC formats]

Publication:

Learning structural heterogeneity from cryo-electron sub-tomograms with tomoDRGN

Powell BM, Davis JH

bioRxiv (2023)

DOI: 10.1101/2023.05.31.542975

Related EMDB entry:

EMD-43287

Deposited:

2023-05-18

Released:

2024-03-18

Last modified:

2024-03-18

Imageset size:

788.54 GB

Imageset DOI:

10.6019/EMPIAR-11843

Experimental metadata:

Download xml json

Contains:

picked particles - multiframe - processed
subtomograms

Image Sets

1. Image tilt-series of ribosomes extracted from EMPIAR-10499 at intramolecular scale, small box, large pixel

Category:

picked particles - multiframe - processed

Image format:

MRCS

No. of images or tilt series:

22291

Image size:

(96, 96)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(3.71, 3.71)

Details:

Particle positions in starfiles/10499_22k_box96_angpix3.7.star
Images are tilt-series of particles extracted in Warp/M using the "extract subtomograms > image-series" option

Files:

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2. Image tilt-series subtomograms of ribosomes extracted from EMPIAR-10499 at intramolecular scale, medium box, small pixel

Category:

picked particles - multiframe - processed

Image format:

MRCS

No. of images or tilt series:

22291

Image size:

(210, 210)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.71, 1.71)

Details:

Particle positions in starfiles/10499_22k_box210_angpix1.7.star
Images are tilt-series of particles extracted in Warp/M using the "extract subtomograms > image-series" option

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. Image tilt-series subtomograms of ribosomes extracted from EMPIAR-10499 at intramolecular scale, large box, small pixel

Category:

picked particles - multiframe - processed

Image format:

MRCS

No. of images or tilt series:

22291

Image size:

(352, 352)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.71, 1.71)

Details:

Particle positions in starfiles/10499_22k_box352_angpix1.7.star
Images are tilt-series of particles extracted in Warp/M using the "extract subtomograms > image-series" option

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. Image tilt-series subtomograms of ribosomes extracted from EMPIAR-10499 at intermolecular scale

Category:

picked particles - multiframe - processed

Image format:

MRCS

No. of images or tilt series:

22291

Image size:

(200, 200)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(3.71, 3.71)

Details:

Particle positions in starfiles/10499_22k_box200_angpix3.7.star
Images are tilt-series of particles extracted in Warp/M using the "extract subtomograms > image-series" option

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

5. Volumetric subtomograms of ribosomes extracted from EMPIAR-10499 at intramolecular scale

Category:

subtomograms

Image format:

MRC

No. of images or tilt series:

22291

Image size:

(64, 64)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(6.0, 6.0)

Details:

Particle positions in starfiles/10499_22k_box64_angpix6_volumeseries.star
Particles are volumetric subtomograms extracted in Warp/M using the "extract subtomograms > volume-series" option

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

6. Volumetric subtomograms of ribosome•SecDF complex extracted from EMPIAR-10499 at intramolecular scale

Category:

subtomograms

Image format:

MRC

No. of images or tilt series:

380

Image size:

(192, 192)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(4.0, 4.0)

Details:

Particle positions in starfiles/10499_22k_box192_angpix4_volumeseries_secdfribos.star
Particles are volumetric subtomograms extracted in Warp/M using the "extract subtomograms > volume-series" option

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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