EMPIAR-11709 - A tomogram of a concave region on the nucleus of a neutrophil [57 multi-frame micrographs composed of 10 frames each in TIFF format]

EMPIAR-11709

A tomogram of a concave region on the nucleus of a neutrophil [57 multi-frame micrographs composed of 10 frames each in TIFF format]

Publication:

Vimentin regulates nuclear segmentation in neutrophils

Liu J, Li Z, Li M, Du W, Baumeister W, Yang J, Guo Q

Proceedings of the National Academy of Sciences of the United States of America 120 (2023)

PMID: 37983515

DOI: 10.1073/pnas.2307389120

Related EMDB entry:

EMD-35979

Deposited:

2023-10-04

Released:

2025-07-16

Last modified:

2025-07-16

Imageset size:

35.72 GB

Imageset DOI:

10.6019/EMPIAR-11709

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned mutiframe micrographs of the concave nuclear region in a neutrophil

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

Image size:

(11520, 8184)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(1.66, 1.66)

Details:

Data was collected in super resolution mode. Frames before motion correction are in the folder: "frames". Segmentation is in the folder "Segmentation" (can be opened by ChimeraX). Coordinates for ribosomes and fibers are deposed in "ribo_coord" and "fiber_coord".

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Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

See all citations

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