EMPIAR-11703 - Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric and asymmetric conformations [multiple data sets in MRC format]

EMPIAR-11703

Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric and asymmetric conformations [multiple data sets in MRC format]

Publication:

Structure of the cell-binding component of the Clostridium difficile binary toxin reveals a di-heptamer macromolecular assembly

Xu X, Godoy-Ruiz R, Adipietro KA, Peralta C, Ben-Hail D, Varney KM, Cook ME, Roth BM, Wilder PT, Cleveland T, Grishaev A, Neu HM, Michel SLJ, Yu W, Beckett D, Rustandi RR, Lancaster C, Loughney JW, Kristopeit A, Christanti S, Olson JW, MacKerell AD, Georges AD, Pozharski E, Weber DJ

Proceedings of the National Academy of Sciences of the United States of America 117 (2020) 1049-1058

PMID: 31896582

DOI: 10.1073/pnas.1919490117

Related EMDB entry:

EMD-20926 EMD-20927

Deposited:

2023-05-05

Released:

2023-12-04

Last modified:

2023-12-04

Imageset size:

704.36 GB

Imageset DOI:

10.6019/EMPIAR-11703

Experimental metadata:

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Compressed by PDBj:

Image formats and pixel types shown below are those of the original, non-compressed files.

MRC movies (frames/*.frames.mrc) in this entry were compressed by bzip2 (pbzip2)
by EMPIAR Japan to save space and bandwidth.

Some programs (e.g. RELION >= 4.0.1 and CryoSPARC) can process compressed movies without explicit
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you might want to convert decompressed MRC movies into TIFF to save your local storage.

Original size:   1,340,467,908 kilobytes
Compressed size:   197,830,480 kilobytes

Contains:

micrographs - multiframe
micrographs - single frame

Image Sets

1. multi-frame micrographs of CDTB

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

1205

Image size:

(3710, 3838)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(1.06, 1.06)

Details:

---

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2. motion-corrected micrographs of CDTB (no DW)

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

1205

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.06, 1.06)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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3. motion-corrected micrographs of CDTB (DW)

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

1205

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.06, 1.06)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

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Browse All Files

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Citations

Structural basis for HIV-1 antagonism of host APOBEC3G via Cullin E3 ligase.

Ito F, Alvarez-Cabrera AL, Liu S, Yang H, Shiriaeva A, Zhou ZH, Chen XS. (2023)

The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection.

Rigden DJ, Fernández XM. (2023)

EMPIAR: the Electron Microscopy Public Image Archive.

Iudin A, Korir PK, Somasundharam S, Weyand S, Cattavitello C, Fonseca N, Salih O, Kleywegt GJ, Patwardhan A. (2023)

CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM.

Serra Lleti JM, Steyer AM, Schieber NL, Neumann B, Tischer C, Hilsenstein V, Holtstrom M, Unrau D, Kirmse R, Lucocq JM, Pepperkok R, Schwab Y. (2023)

Structure of a RecT/Redβ family recombinase in complex with a duplex intermediate of DNA annealing.

Caldwell BJ, Norris AS, Karbowski CF, Wiegand AM, Wysocki VH, Bell CE. (2022)

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