EMPIAR-11620 - CryoEM micrographs of HK97 small terminase in complex with DNA (2 datasets:550 and 1874 multi-frame micrographs composed of 50 frames in tif format) [multiple data sets in TIFF format]

EMPIAR-11620

CryoEM micrographs of HK97 small terminase in complex with DNA (2 datasets:550 and 1874 multi-frame micrographs composed of 50 frames in tif format) [multiple data sets in TIFF format]

Publication:

Structural basis for DNA recognition by a viral genome-packaging machine

Chechik M, Greive SJ, Antson AA, Jenkins HT

Proceedings of the National Academy of Sciences of the United States of America 121 (2024)

PMID: 39116131

DOI: 10.1073/pnas.2406138121

Related EMDB entry:

EMD-17794 EMD-17818

Deposited:

2023-07-19

Released:

2024-08-28

Last modified:

2024-08-28

Imageset size:

549.92 GB

Imageset DOI:

10.6019/EMPIAR-11620

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned multi-frame micrographs of HK97 small terminase:DNA complex [dataset1]

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

550

Image size:

(3838, 3710)

Pixel type:

UNSIGNED 32 BIT INTEGER

Pixel spacing:

(1.07, 1.07)

Details:

---

Files:

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2. Unaligned multi-frame micrographs of HK97 small terminase:DNA complex [dataset2]

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

1874

Image size:

(3838, 3710)

Pixel type:

UNSIGNED 32 BIT INTEGER

Pixel spacing:

(1.07, 1.07)

Details:

---

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)