EMPIAR-11200 - Mycobacterium phage Adephagia [5688 multi-frame micrographs composed of 50 frames each in TIFF format]

EMPIAR-11200

Mycobacterium phage Adephagia [5688 multi-frame micrographs composed of 50 frames each in TIFF format]

Publication:

A structural dendrogram of the actinobacteriophage major capsid proteins provides important structural insights into the evolution of capsid stability

Podgorski JM, Freeman K, Gosselin S, Huet A, Conway JF, Bird M, Grecco J, Patel S, Jacobs-Sera D, Hatfull G, Gogarten JP, Ravantti J, White SJ

Structure (London, England : 1993) (2023)

PMID: 36649709

DOI: 10.1016/j.str.2022.12.012

Related EMDB entry:

EMD-28012

Deposited:

2022-09-01

Released:

2024-06-06

Last modified:

2024-06-06

Imageset size:

1.83 TB

Imageset DOI:

10.6019/EMPIAR-11200

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Raw multi-frame images.

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

5688

Image size:

(11520, 8184)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.4008, 0.4008)

Details:

######################################################################################
####################### METADATA INFO FOR PNCC USERS #################################
######################################################################################
assesments:
contamination: null
ice quality: null
sample dispersity: null
metadata:
program:
aberration_correction_value: 2.7
instrument_id: 34290
proposal_id: 51282
session_id: data
short_sample_name: Adephagia_3_data
voltage: 300
nominal_dose_rate_eps: null
notes: '

multiline comments can be inserted here'

######################################################################################
########## HEADER INFO ON SELECT ONE MOVIE FROM THE DATASET UNDER FRAMES/ ###########
######################################################################################

RO image file on unit 1 : frames/stack_00009_X-1Y-1-0.tif Size= 346072 K

This is a TIFF file.

Number of columns, rows, sections ..... 11520 8184 50
Map mode .............................. 0 (byte)
Start cols, rows, sects, grid x,y,z ... 0 0 0 11520 8184 50
Pixel spacing (Angstroms).............. 0.4008 0.4008 0.4008
Cell angles ........................... 90.000 90.000 90.000
Fast, medium, slow axes ............... X Y Z
Origin on x,y,z ....................... 0.000 0.000 0.000
Minimum density ....................... 0.0000
Maximum density ....................... 87.000
Mean density .......................... 43.500
tilt angles (original,current) ........ 0.0 0.0 0.0 0.0 0.0 0.0
Space group,# extra bytes,idtype,lens . 0 0 0 0

0 Titles :

######################################################################################
########################## PIXEL SIZE AND EXPOSURE DOSAGE ##########################
######################################################################################

Nominal Pixel Size, A: 0.4008
Exposure dose per frame, e-/A^2: 0.488668371839
Total exposure dose, e-/A^2: 24.433418592

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This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

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Citations

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Ito F, Alvarez-Cabrera AL, Liu S, Yang H, Shiriaeva A, Zhou ZH, Chen XS. (2023)

The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection.

Rigden DJ, Fernández XM. (2023)

EMPIAR: the Electron Microscopy Public Image Archive.

Iudin A, Korir PK, Somasundharam S, Weyand S, Cattavitello C, Fonseca N, Salih O, Kleywegt GJ, Patwardhan A. (2023)

CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM.

Serra Lleti JM, Steyer AM, Schieber NL, Neumann B, Tischer C, Hilsenstein V, Holtstrom M, Unrau D, Kirmse R, Lucocq JM, Pepperkok R, Schwab Y. (2023)

Structure of a RecT/Redβ family recombinase in complex with a duplex intermediate of DNA annealing.

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