EMPIAR-11055 - Crosshair, semi-automated targeting for electron microscopy with a motorised ultramicrotome [multiple data sets in TIFF and PNG formats]

EMPIAR-11055

Crosshair, semi-automated targeting for electron microscopy with a motorised ultramicrotome [multiple data sets in TIFF and PNG formats]

Publication:

Crosshair, semi-automated targeting for electron microscopy with a motorised ultramicrotome

Meechan K, Guan W, Riedinger A, Stankova V, Yoshimura A, Pipitone R, Milberger A, Schaar H, Romero-Brey I, Templin R, Peddie C J, Schieber N L, Jones M L, Collinson L, Schwab Y

BioRxiv (2022)

Related EMDB entry:

Deposited:

2022-05-09

Released:

2022-06-01

Last modified:

2022-06-01

Imageset size:

162.10 GB

Imageset DOI:

10.6019/EMPIAR-11055

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. sample_a_before_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(1000, 660)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample a before targeting (ready for crosshair)

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. sample_a_after_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(738, 870)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample a after targeting (ready for accuracy measures)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. Raw sample a micro-CT - before reconstruction and before targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

939

Image size:

(2016, 1344)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample a micro-CT (before reconstruction and before targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. Raw sample a micro-CT - after reconstruction and before targeting

Category:

reconstructed volumes

Image format:

PNG

No. of images or tilt series:

479

Image size:

(2016, 2016)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Raw sample a micro-CT (after reconstruction and before targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

5. Raw sample a micro-CT - before reconstruction and after targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

1799

Image size:

(2016, 1344)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample a micro-CT (before reconstruction and after targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

6. Raw sample a micro-CT - after reconstruction and after targeting

Category:

reconstructed volumes

Image format:

PNG

No. of images or tilt series:

465

Image size:

(2016, 2016)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample a micro-CT (after reconstruction and after targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

7. sample_b_before_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(1046, 688)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample b before targeting (ready for crosshair)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

8. sample_b_after_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(1224, 774)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample b after targeting (ready for accuracy measures)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

9. Raw sample b micro-CT - before reconstruction and before targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

1799

Image size:

(2016, 1344)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample b micro-CT (before reconstruction and before targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

10. Raw sample b micro-CT - after reconstruction and before targeting

Category:

reconstructed volumes

Image format:

PNG

No. of images or tilt series:

441

Image size:

(2016, 2016)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample b micro-CT (after reconstruction and before targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

11. Raw sample b micro-CT - before reconstruction and after targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

1799

Image size:

(2016, 1344)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample b micro-CT (before reconstruction and after targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

12. Raw sample b micro-CT - after reconstruction and after targeting

Category:

reconstructed volumes

Image format:

PNG

No. of images or tilt series:

559

Image size:

(2016, 2016)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample b micro-CT (after reconstruction and after targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

13. sample_c_before_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(838, 568)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample c before targeting (ready for crosshair)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

14. sample_c_after_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(663, 867)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample c after targeting (ready for accuracy measures)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

15. Raw sample c micro-CT - before reconstruction and before targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

1799

Image size:

(2016, 1344)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample c micro-CT (before reconstruction and before targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

16. Raw sample c micro-CT - after reconstruction and before targeting

Category:

reconstructed volumes

Image format:

PNG

No. of images or tilt series:

462

Image size:

(2016, 2016)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample c micro-CT (after reconstruction and before targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

17. Raw sample c micro-CT - before reconstruction and after targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

1799

Image size:

(2016, 1344)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample c micro-CT (before reconstruction and after targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

18. Raw sample c micro-CT - after reconstruction and after targeting

Category:

reconstructed volumes

Image format:

PNG

No. of images or tilt series:

430

Image size:

(2016, 2016)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample c micro-CT (after reconstruction and after targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

19. sample_d_before_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(894, 576)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample d before targeting (ready for crosshair)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

20. sample_d_after_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(939, 762)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample d after targeting (ready for accuracy measures)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

21. Raw sample d micro-CT - before reconstruction and before targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

1799

Image size:

(2016, 1344)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample d micro-CT (before reconstruction and before targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

22. Raw sample d micro-CT - after reconstruction and before targeting

Category:

reconstructed volumes

Image format:

PNG

No. of images or tilt series:

519

Image size:

(2016, 2016)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample d micro-CT (after reconstruction and before targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

23. Raw sample d micro-CT - before reconstruction and after targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

1799

Image size:

(2016, 1344)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample d micro-CT (before reconstruction and after targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

24. Raw sample d micro-CT - after reconstruction and after targeting

Category:

reconstructed volumes

Image format:

PNG

No. of images or tilt series:

459

Image size:

(2016, 2016)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample d micro-CT (after reconstruction and after targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

25. sample_e_before_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(770, 706)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample e before targeting (ready for crosshair)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

26. sample_e_after_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(807, 846)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample e after targeting (ready for accuracy measures)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

27. Raw sample e micro-CT - before reconstruction and before targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

939

Image size:

(2016, 1344)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample e micro-CT (before reconstruction and before targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

28. Raw sample e micro-CT - after reconstruction and before targeting

Category:

reconstructed volumes

Image format:

PNG

No. of images or tilt series:

463

Image size:

(2016, 2016)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample e micro-CT (after reconstruction and before targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

29. Raw sample e micro-CT - before reconstruction and after targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

1799

Image size:

(2016, 1344)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample e micro-CT (before reconstruction and after targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

30. Raw sample e micro-CT - after reconstruction and after targeting

Category:

reconstructed volumes

Image format:

PNG

No. of images or tilt series:

443

Image size:

(2016, 2016)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample e micro-CT (after reconstruction and after targeting) from Bruker Skyscan 1272, along with log files of scan settings

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

31. sample_f_before_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(994, 1015)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample f before targeting (ready for crosshair)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

32. sample_f_after_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(993, 1015)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample f after targeting (ready for accuracy measures)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

33. Raw sample f micro-CT - after reconstruction and before targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(994, 1015)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample f micro-CT (after reconstruction and before targeting) from Versa 510 X-ray microscope (Zeiss). The corresponding before reconstruction file (.txrm) is available in the same directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

34. Raw sample f micro-CT - after reconstruction and after targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(993, 1015)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample f micro-CT (after reconstruction and after targeting) from Versa 510 X-ray microscope (Zeiss). The corresponding before reconstruction file (.txrm) is available in the same directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

35. sample_g_before_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(992, 1015)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample g before targeting (ready for crosshair)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

36. sample_g_after_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(1015, 987)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample g after targeting (ready for accuracy measures)

Files:

Archives and downloads the selected files into an uncompressed zip file.

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Download a list of selected files.

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37. Raw sample g micro-CT - after reconstruction and before targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(992, 1015)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample g micro-CT (after reconstruction and before targeting) from Versa 510 X-ray microscope (Zeiss). The corresponding before reconstruction file (.txrm) is available in the same directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

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38. Raw sample g micro-CT - after reconstruction and after targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(987, 1015)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample g micro-CT (after reconstruction and after targeting) from Versa 510 X-ray microscope (Zeiss). The corresponding before reconstruction file (.txrm) is available in the same directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

39. sample_h_before_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(992, 1015)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample h before targeting (ready for crosshair)

Files:

Archives and downloads the selected files into an uncompressed zip file.

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Download a list of selected files.

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40. sample_h_after_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(991, 1015)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample h after targeting (ready for accuracy measures)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

41. Raw sample h micro-CT - after reconstruction and before targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(992, 1015)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample h micro-CT (after reconstruction and before targeting) from Versa 510 X-ray microscope (Zeiss). The corresponding before reconstruction file (.txrm) is available in the same directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

42. Raw sample h micro-CT - after reconstruction and after targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(991, 1015)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample h micro-CT (after reconstruction and after targeting) from Versa 510 X-ray microscope (Zeiss). The corresponding before reconstruction file (.txrm) is available in the same directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

43. sample_i_before_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(992, 1015)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample i before targeting (ready for crosshair)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

44. sample_i_after_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(1015, 991)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample i after targeting (ready for accuracy measures)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

45. Raw sample i micro-CT - after reconstruction and before targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(992, 1015)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample i micro-CT (after reconstruction and before targeting) from Versa 510 X-ray microscope (Zeiss). The corresponding before reconstruction file (.txrm) is available in the same directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

46. Raw sample i micro-CT - after reconstruction and after targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(991, 1015)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample i micro-CT (after reconstruction and after targeting) from Versa 510 X-ray microscope (Zeiss). The corresponding before reconstruction file (.txrm) is available in the same directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

47. sample_j_before_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(993, 1015)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample j before targeting (ready for crosshair)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

48. sample_j_after_targeting.tif

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(1015, 986)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Micro-CT of sample j after targeting (ready for accuracy measures)

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

49. Raw sample j micro-CT - after reconstruction and before targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(993, 1015)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample j micro-CT (after reconstruction and before targeting) from Versa 510 X-ray microscope (Zeiss). The corresponding before reconstruction file (.txrm) is available in the same directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

50. Raw sample j micro-CT - after reconstruction and after targeting

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

Image size:

(986, 1015)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw sample j micro-CT (after reconstruction and after targeting) from Versa 510 X-ray microscope (Zeiss). The corresponding before reconstruction file (.txrm) is available in the same directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

High-resolution ab initio reconstruction enables cryo-EM structure determination of small particles

Kim K, Li H, Clarke OB. (2025)

CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy.

Krentzel D, Elphick M, Domart MC, Peddie CJ, Laine RF, Shand C, Henriques R, Collinson LM, Jones ML. (2025)

CryoEMNet driven symmetry-aware molecular reconstruction through deep learning enhanced electron microscopy.

Arora S, Pan SH, Kumar S, Singh SK, Chauhan U, Alhalabi W, Arya V, Alsulami BS, Hsu CH, Chui KT, Gupta BB. (2025)

PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modeling and machine learning.

Costa-Gomes B, Greer J, Juraschko N, Parkhurst J, Mirecka J, Famili M, Rangel-Smith C, Strickson O, Lowe A, Basham M, Burnley T. (2025)

Self-supervised learning for generalizable particle picking in cryo-EM micrographs.

Zamanos A, Koromilas P, Bouritsas G, Kastritis PL, Panagakis Y. (2025)

Laser flash melting cryo-EM samples to overcome preferred orientation.

Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ. (2025)

In situ structure determination of conformationally flexible targets using nextPYP.

Liu HF, Zhou Y, Huang Q, Martin J, Bartesaghi A. (2025)

EMICSS: added-value annotations for EMDB entries.

Duraisamy AK, Fonseca N, Kleywegt GJ, Patwardhan A, Morris KL. (2025)

Global conformations of <i>Pichia pastoris</i> complex I are distinguished by the binding of a unique interdomain bridging subunit.

Lee CS, Grba DN, Wright JJ, Ivanov BS, Hirst J. (2025)

Overcoming Preferred Orientation in Cryo-EM With Ultrasonic Excitation During Vitrification

Williams HM, Curtis WA, Haubner M, Hruby J, Drabbels M, Lorenz UJ. (2025)

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