EMPIAR-10963 - Tilt series of EIAV CASPNC VLPs acquired on Krios G3i with Gatan BioQuantum and K3 [multiple data sets in TIFF and MRC formats]

EMPIAR-10963

Tilt series of EIAV CASPNC VLPs acquired on Krios G3i with Gatan BioQuantum and K3 [multiple data sets in TIFF and MRC formats]

Publication:

Exploring high-resolution cryo-ET and subtomogram averaging capabilities of contemporary DEDs

Obr M, Hagen WJ, Dick RA, Yu L, Kotecha A, Schur FK

bioRxiv (2022)

DOI: 10.1101/2022.01.10.475481

Related EMDB entry:

EMD-14034 EMD-14033 EMD-14037

Deposited:

2022-02-11

Released:

2022-03-07

Last modified:

2022-03-07

Imageset size:

106.23 GB

Imageset DOI:

10.6019/EMPIAR-10963

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe
tilt series

Image Sets

1. Unaligned movies of EIAV VLPs

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

1429

Image size:

(11520, 8184)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.411, 0.411)

Details:

Please refer to the provided README.txt for more information.

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. Tilt series of EIAV VLPs

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(5760, 4092)

Pixel type:

SIGNED 16 BIT INTEGER

Pixel spacing:

(0.822, 0.822)

Details:

Please refer to the provided README.txt for more information.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Ito F, Alvarez-Cabrera AL, Liu S, Yang H, Shiriaeva A, Zhou ZH, Chen XS. (2023)

The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection.

Rigden DJ, Fernández XM. (2023)

EMPIAR: the Electron Microscopy Public Image Archive.

Iudin A, Korir PK, Somasundharam S, Weyand S, Cattavitello C, Fonseca N, Salih O, Kleywegt GJ, Patwardhan A. (2023)

CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM.

Serra Lleti JM, Steyer AM, Schieber NL, Neumann B, Tischer C, Hilsenstein V, Holtstrom M, Unrau D, Kirmse R, Lucocq JM, Pepperkok R, Schwab Y. (2023)

Structure of a RecT/Redβ family recombinase in complex with a duplex intermediate of DNA annealing.

Caldwell BJ, Norris AS, Karbowski CF, Wiegand AM, Wysocki VH, Bell CE. (2022)

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