EMPIAR-10675 - The Myosin II Coiled Coil Domain Atomic Structure in its Native Environment [multiple data sets in MRC and MRCS formats]

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EMPIAR-10675

The Myosin II Coiled Coil Domain Atomic Structure in its Native Environment [multiple data sets in MRC and MRCS formats]

Publication:

The myosin II coiled-coil domain atomic structure in its native environment

Rahmani H, Ma W, Hu Z, Daneshparvar N, Taylor DW, McCammon JA, Irving TC, Edwards RJ, Taylor KA

Proceedings of the National Academy of Sciences of the United States of America 118 (2021)

PMID: 33782130

DOI: 10.1073/pnas.2024151118

Related EMDB entry:

EMD-22975

Deposited:

2019-11-04

Released:

2021-07-29

Last modified:

2022-02-28

Imageset size:

13.30 TB

Imageset DOI:

10.6019/EMPIAR-10675

Experimental metadata:

Download xml json

Compressed by PDBj:

Image formats and pixel types shown below are those of the original, non-compressed files.

--- file not found ---

Contains:

micrographs - multiframe
micrographs - single frame
picked particles - single frame - unprocessed

Image Sets

1. Frame Stacks 1/3

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

1432

Image size:

(8192, 8192)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.009, 1.009)

Details:

Particle positions are given in the final star file in the particle stack directory.

Files:

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2. Frame Stacks 2/3

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

591

Image size:

(8192, 8192)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.009, 1.009)

Details:

---

Files:

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3. Frame Stacks 3/3

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

1432

Image size:

(8192, 8192)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.009, 1.009)

Details:

---

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

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rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. Micrographs before frames alignment

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

3507

Image size:

(8192, 8192)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.009, 1.009)

Details:

Micrographs before frame alignment.
Gain References to be used for frame alignment are stored in
data/Micrographs/17dec15_ref_a

directory.

Files:

This entry cannot be downloaded from PDBj.

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5. Micrographs: frame-aligned and dose-weighted

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

3507

Image size:

(8192, 8192)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.009, 1.009)

Details:

---

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

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6. Particle Stack

Category:

picked particles - single frame - unprocessed

Image format:

MRCS

No. of images or tilt series:

216045

Image size:

(768, 768)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.009, 1.009)

Details:

Particle stack produced using relion with .star and .mrcs files. The mrcs file has been split with the command:
split -b 10000000k 17dec15a-768-localctf.mrcs -d parts-

To combine it back execute:
cat parts-* > 17dec15a-768-localctf_combined.mrcs

Files:

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