EMPIAR-10450 - Cryo electron tomography after FIB-milling of Planctomycetes species Gemmata obscuriglobus (#2) [101 tilt series in MRC format]

EMPIAR-10450

Cryo electron tomography after FIB-milling of Planctomycetes species Gemmata obscuriglobus (#2) [101 tilt series in MRC format]

Publication:

Evolutionary Remodeling of the Cell Envelope in Bacteria of the Planctomycetes Phylum

Mahajan M, Seeger C, Yee B, Andersson SGE

Genome biology and evolution 12 (2020) 1528-1548

PMID: 32761170

DOI: 10.1093/gbe/evaa159

Related EMDB entry:

EMD-11073

Deposited:

2020-06-23

Released:

2020-12-11

Last modified:

2020-12-11

Imageset size:

2.68 GB

Imageset DOI:

10.6019/EMPIAR-10450

Experimental metadata:

Download xml json

Contains:

tilt series

Image Sets

1. Cryo-ET tilt series of Gemmata obscuriglobus after FIB-milling (#2/2)

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

101

Image size:

(3708, 3838)

Pixel type:

SIGNED 16 BIT INTEGER

Pixel spacing:

(7.286, 7.286)

Details:

Cryo-ET tilt series from Gemmata obscuriglobus obtained after FIB-milling. Total electron dose: 95e-/Å; 101 tilts; -50°/+50°, 1° increment, start at +20°; defocus: -6µm

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)