EMPIAR-10215 - Rabbit muscle aldolase single particle cryoEM [multiple data sets in MRC format]

EMPIAR-10215

Rabbit muscle aldolase single particle cryoEM [multiple data sets in MRC format]

Publication:

Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs

Bepler T, Morin A, Rapp M, Brasch J, Shapiro L, Noble AJ, Berger B

Nature methods 16 (2019) 1153-1160

PMID: 31591578

DOI: 10.1038/s41592-019-0575-8

Related EMDB entry:

EMD-20529 EMD-20532 EMD-20531

Deposited:

2018-10-03

Released:

2019-04-05

Last modified:

2020-02-24

Imageset size:

1.44 TB

Imageset DOI:

10.6019/EMPIAR-10215

Experimental metadata:

Download xml json

Contains:

micrographs - single frame
micrographs - multiframe
picked particles - single frame - unprocessed

Image Sets

1. Micrographs along with all other magnification images from the collection

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

1061

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.832, 0.832)

Details:

Frame aligned with MotionCor2.

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

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Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. Micrograph frames

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

1061

Image size:

(7420, 7676)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(0.416, 0.416)

Details:

Super-res frames and references. Includes picks for Topaz and Topaz-published.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. CryoEM structures in the paper

Category:

picked particles - single frame - unprocessed

Image format:

MRC

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(None, None)

Details:

All structures for EMPIAR-10025, EMPIAR-10028, NYSBC-aldo with Topaz, published, and Topaz-published picks as described in the manuscript titled: Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs

Includes most Topaz particle picks and stacks for EMPIAR-10025, EMPIAR-10028, NYSBC-aldo with Topaz, published, and Topaz-published picks as described in the manuscript titled: Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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