EMPIAR-10129 - CryoET of hemagglutinin single particle with spot-to-plunge time of 800ms [multiple data sets in MRC format]

EMPIAR-10129

CryoET of hemagglutinin single particle with spot-to-plunge time of 800ms [multiple data sets in MRC format]

Publication:

Routine single particle CryoEM sample and grid characterization by tomography

Scapin G, Rapp M, Eng ET

eLife 7 (2018)

PMID: 29809143

DOI: 10.7554/eLife.34257

Related EMDB entry:

EMD-7135

Deposited:

2017-12-05

Released:

2017-12-18

Last modified:

2022-07-14

Imageset size:

33.98 GB

Imageset DOI:

10.6019/EMPIAR-10129

Experimental metadata:

Download xml json

Version history:

2018-04-04

REL

Updated the entry title with additional information.

Contains:

tilt series

Image Sets

1. SerialEM tilt-series stacks (no frame alignment) and mdocs

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(3712, 4984)

Pixel type:

SIGNED 16 BIT INTEGER

Pixel spacing:

(2.34, 2.34)

Details:

---

Files:

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2. Appion-Protomo tilt-series alignments

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(3712, 4984)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(2.34, 2.34)

Details:

Includes a full tilt-series alignment run for each tilt-series. To view properly, navigate to the protomo_alignments folder in Appion-Protomo.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Kim K, Li H, Yuan Q, Melville Z, Zalk R, des Georges A, Frank J, Hendrickson WA, Marks AR, Clarke OB. (2026)

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Burton Smith RN, Murata K. (2026)

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Watanabe R, Lee EB. (2026)

Ligand-induced activation of RyR1 in native membranes.

Mikirtumov V, Golusik S, Huo R, Sprink T, Balyschew N, Yang W, Diebolder C, Yuan S, Kotecha A, Kudryashev M. (2026)

QwenCryoMarker: a universal post-processing framework for contamination-aware particle cleaning.

Sun Y, Zhao J, Xu N, Wang L, Ding W, Li M. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

CryoMV: Structure-Prior-Guided Modeling and Real-Particle Validation of Continuous Conformational Transitions in Cryo-EM

Li F, Dong H, Tang S, Wang X, Zhang C, Ji C, Han R, Zhang F, Wan X. (2026)

Easymode: general pretrained networks for cellular cryo-ET enable flexible approaches to subtomogram averaging

So-Last MGF, Burt A, Hale T, Allegretti M. (2026)

A multimeric pore complex in the poxvirus core revealed by integrative structural analysis.

Liu J, Schäfer S, Lehnung S, Baumann LM, Mühlberg L, Steiner C, Schreiber M, Linder M, Welsch S, Liu F, Bogdanow B, Krijnse Locker J, Turoňová B. (2026)

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