EMPIAR-10032 - Cryo electron microscopy of YnaI [multiple data sets in MRC format]

This entry has been removed from PDBj storage. Please download it from EMPIAR-EBI.

EMPIAR-10032

Cryo electron microscopy of YnaI [multiple data sets in MRC format]

Publication:

The Structure of YnaI Implies Structural and Mechanistic Conservation in the MscS Family of Mechanosensitive Channels.

Bottcher B, Prazak V, Rasmussen A, Black SS, Rasmussen T

Structure 23 (2015) 1705-1714

PMID: 26256535

DOI: doi:10.1016/j.str.2015.06.023

Related EMDB entry:

EMD-3035

Deposited:

2015-08-28

Released:

2015-08-28

Last modified:

2015-08-28

Imageset size:

107.63 GB

Imageset DOI:

10.6019/EMPIAR-10032

Experimental metadata:

Download xml json

Contains:

picked particles - multiframe - processed
micrographs - single frame

Image Sets

1. ynai_particles

Category:

picked particles - multiframe - processed

Image format:

MRC

No. of images or tilt series:

34799

Image size:

(160, 160)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.729, 1.729)

Details:

Stack of phase flipped particle images + matching relion-star file

Files:

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2. ynai_micrographs

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

3308

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(1.729, 1.729)

Details:

Micrographs of YnaI (F20/TVIPS F416)
The approximate dose is 20 electrons/A2; micrographs have been acquired with EM-tools

The picked particle coordinates are found in: data/ynai/coordinates. These are the coordinates (EMAN-format) of the manually selected particle images.
The coordinates match the micrographs which have the same name but the extension tif.
The picked particle images are found in: data/particles_phaseflipped

Files:

This entry cannot be downloaded from PDBj.

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We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

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Citations

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Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

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