EMPIAR-12661
FIB-SEM Trypanosoma cruzi cell samples [multiple data sets in TIFF and PNG formats]
Publication:

Contextual High-throughput 3D Volume Electron Microscopy Data Acquisition Using Artificial Intelligence

Hurník Konečná T, Jančík R, Slamková D, Přibyl B, Tomova C, Rotkina L, Burch-Smith T, Sviben S, Fitzpatrick JAJ, Czymmek KJ

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Related EMDB entry:
Deposited:
2025-04-01
Released:
2025-06-30
Last modified:
2025-06-30
Imageset size:
10.81 GB
Imageset DOI:
Experimental metadata:
Download xml json
Contains:
  • reconstructed volumes
1. FIB-SEM Trypanosoma cruzi cell samples - merge images
Category:
reconstructed volumes
Image format:
TIFF
No. of images or tilt series:
488
Image size:
(3807, 2402)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(100.0, 100.0)
Details:
Combination of rescale low-resolution background and high-resolution ROI.
Files:
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2. FIB-SEM Trypanosoma cruzi cell samples - low-resolution
Category:
reconstructed volumes
Image format:
TIFF
No. of images or tilt series:
488
Image size:
(1523, 961)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(250.0, 250.0)
Details:
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Files:
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3. FIB-SEM Trypanosoma cruzi cell samples - high-resolution
Category:
reconstructed volumes
Image format:
TIFF
No. of images or tilt series:
488
Image size:
(3807, 2402)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(100.0, 100.0)
Details:
---
Files:
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4. FIB-SEM Trypanosoma cruzi cell samples - annotation of the first slice
Category:
reconstructed volumes
Image format:
PNG
No. of images or tilt series:
1
Image size:
(3807, 2402)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(100.0, 100.0)
Details:
Manual annotation of the fist slice.
Files:
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Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)
Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)
Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)