EMPIAR-12661 - FIB-SEM Trypanosoma cruzi cell samples [multiple data sets in TIFF and PNG formats]

EMPIAR-12661

FIB-SEM Trypanosoma cruzi cell samples [multiple data sets in TIFF and PNG formats]

Publication:

Contextual High-throughput 3D Volume Electron Microscopy Data Acquisition Using Artificial Intelligence

Hurník Konečná T, Jančík R, Slamková D, Přibyl B, Tomova C, Rotkina L, Burch-Smith T, Sviben S, Fitzpatrick JAJ, Czymmek KJ

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Related EMDB entry:

Deposited:

2025-04-01

Released:

2025-06-30

Last modified:

2025-06-30

Imageset size:

10.81 GB

Imageset DOI:

10.6019/EMPIAR-12661

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. FIB-SEM Trypanosoma cruzi cell samples - merge images

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

488

Image size:

(3807, 2402)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(100.0, 100.0)

Details:

Combination of rescale low-resolution background and high-resolution ROI.

Files:

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2. FIB-SEM Trypanosoma cruzi cell samples - low-resolution

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

488

Image size:

(1523, 961)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(250.0, 250.0)

Details:

---

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. FIB-SEM Trypanosoma cruzi cell samples - high-resolution

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

488

Image size:

(3807, 2402)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(100.0, 100.0)

Details:

---

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. FIB-SEM Trypanosoma cruzi cell samples - annotation of the first slice

Category:

reconstructed volumes

Image format:

PNG

No. of images or tilt series:

Image size:

(3807, 2402)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(100.0, 100.0)

Details:

Manual annotation of the fist slice.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

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