EMPIAR-12535 - Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos [multiple data sets in TIFF format]

EMPIAR-12535

Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos [multiple data sets in TIFF format]

Publication:

Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos

Jiang Y, Wang H, Boergens K, Rzepka N, Wang F, Hua Y

Cell Reports Methods 5 (2025)

DOI: 10.1016/j.crmeth.2025.100989

Related EMDB entry:

Deposited:

2025-01-24

Released:

2025-03-20

Last modified:

2025-03-20

Imageset size:

996.43 GB

Imageset DOI:

10.6019/EMPIAR-12535

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. HuaLab-mouse-intestinal-tissue-raw

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

1000

Image size:

(6808, 5024)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

HuaLab-mouse-intestinal-tissue-raw contains 1000 three-dimensional continuous images collected by Serial Section SEM, which have been aligned, contrast adjusted, and converted into 8-bit images with voxel resolution of 8nm * 8nm * 50nm.

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2. HuaLab-mouse-mouse-testis-tissue-raw

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

2605

Image size:

(10419, 4884)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

HuaLab-mouse-mouse-testis-tissue-raw contains 2605 three-dimensional continuous images collected by SBF-SEM, which have been aligned, contrast adjusted, and converted into 8-bit images with voxel resolution of 15nm * 15nm * 50nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. Hualab-DCN-A23-CBA-2M-raw

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

3893

Image size:

(15303, 16449)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

Hualab-DCN-A23-CBA-2M-raw contains 3893 three-dimensional continuous images collected by SBF-SEM, which have been aligned, contrast adjusted, and converted into 8-bit images with voxel resolution of 15nm * 15nm * 50nm.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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