EMPIAR-11953 - Exploring the 3D structure of chromosomes in mitotic cells [multiple data sets in TIFF and DM4 formats]

EMPIAR-11953

Exploring the 3D structure of chromosomes in mitotic cells [multiple data sets in TIFF and DM4 formats]

Publication:

Near millimolar concentration of nucleosomes in mitotic chromosomes from late prometaphase into anaphase

Cisneros-Soberanis F, Simpson EL, Beckett AJ, Pucekova N, Corless S, Kochanova NY, Prior IA, Booth DG, Earnshaw WC

The Journal of cell biology 223 (2024)

PMID: 39186086

DOI: 10.1083/jcb.202403165

Related EMDB entry:

Deposited:

2024-02-22

Released:

2024-08-23

Last modified:

2024-08-23

Imageset size:

33.90 GB

Imageset DOI:

10.6019/EMPIAR-11953

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. Anaphase 1

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

199

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(None, None)

Details:

TIFF files
Type: 8-bit
Voxel size: 28X28X90 nm

Files:

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2. Anaphase 2

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

182

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(None, None)

Details:

TIFF files
Type: 8-bit
Voxel size: 27X27X80 nm

Files:

Archives and downloads the selected files into an uncompressed zip file.

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3. Anaphase 3

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

295

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(None, None)

Details:

TIFF files
Type: 8-bit
Voxel size: 36X36X80 nm

Files:

Archives and downloads the selected files into an uncompressed zip file.

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4. Anaphase 4

Category:

micrographs - single frame

Image format:

DM4

No. of images or tilt series:

309

Image size:

(None, None)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw data

Files:

Archives and downloads the selected files into an uncompressed zip file.

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5. Prometaphase 1

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

164

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(None, None)

Details:

TIFF files
Type: 8-bit
Voxel size: 29X29X70 nm

Files:

Archives and downloads the selected files into an uncompressed zip file.

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6. Prometaphase 2

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

150

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(None, None)

Details:

TIFF files
Type: 8-bit
Voxel size: 28X28X70 nm

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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7. Metaphase 1

Category:

micrographs - single frame

Image format:

DM4

No. of images or tilt series:

250

Image size:

(None, None)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw data

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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8. Metaphase 2

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

225

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(None, None)

Details:

TIFF files
Type: 8-bit
Voxel size: 31X31X75 nm

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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9. Metaphase 3

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

231

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(None, None)

Details:

TIFF files
Type: 8-bit
Voxel size: 28X28X75 nm

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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10. Prometaphase 3

Category:

micrographs - single frame

Image format:

DM4

No. of images or tilt series:

281

Image size:

(None, None)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(None, None)

Details:

Raw data

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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11. Prometaphase 4

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

309

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(None, None)

Details:

TIFF files
Type: 8-bit
Voxel size: 3X3X75 nm

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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12. Telophase 1

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

203

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(None, None)

Details:

TIFF files
Type: 8-bit
Voxel size: 13X13X80 nm

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

13. Telophase 2

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

200

Image size:

(None, None)

Pixel type:

SIGNED BYTE

Pixel spacing:

(None, None)

Details:

TIFF files
Type: 8-bit
Voxel size: 70X70X65 nm

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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