EMPIAR-11828 - Purified Photoreceptor Cell Rootlet Tomograms [multiple data sets in MRC and TIFF formats]

EMPIAR-11828

Purified Photoreceptor Cell Rootlet Tomograms [multiple data sets in MRC and TIFF formats]

Publication:

A cryo-ET study of ciliary rootlet organization

van Hoorn C, Carter AP

eLife (2023)

DOI: 10.7554/eLife.91642.1

Related EMDB entry:

EMD-18121 EMD-18125 EMD-18123 EMD-18124 EMD-18122

Deposited:

2023-08-02

Released:

2024-10-09

Last modified:

2024-10-09

Imageset size:

440.00 GB

Imageset DOI:

10.6019/EMPIAR-11828

Experimental metadata:

Download xml json

Contains:

reconstructed volumes
tilt series

Image Sets

1. Tomo_photoreceptorcell_isonet

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(1022, 1440)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(8.916, 8.916)

Details:

Tomograms reconstructed using isonet

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. TS_photoreceptorcell

Category:

tilt series

Image format:

TIFF

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(2.229, 2.229)

Details:

Raw tomogram tifs

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. Tomo_photoreceptor_deconv

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(1022, 1440)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(8.916, 8.916)

Details:

Tomograms reconstructed using TOMdeconv

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. Tomo_purifiedrootlet_20190423_isonet

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(730, 714)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(11.1, 11.1)

Details:

Tomograms reconstructed using isonet

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

5. TS_purifiedrootlet_20190423

Category:

tilt series

Image format:

TIFF

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(1.388, 1.388)

Details:

Raw tomogram tifs of purified rootlets

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

6. Tomo_purifiedrootlet_20190423_deconv

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(730, 714)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(11.1, 11.1)

Details:

Tomograms of purified rootlets reconstructed with TOMdeconv

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

7. Tomo_purifiedrootlet_20190423_isonet

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(730, 714)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(11.1, 11.1)

Details:

Tomograms of purified rootlets reconstructed with Isonet

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

8. TS_purifiedrootlet_20190427

Category:

tilt series

Image format:

TIFF

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(1.388, 1.388)

Details:

Raw tomogram tifs of purified rootlets

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

9. Tomo_purifiedrootlet_20190427_deconv

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(730, 714)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(11.1, 11.1)

Details:

Tomograms of purified rootlets reconstructed with TOMdeconv

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

10. Tomo_purifiedrootlet_20200129_isonet

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(760, 968)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(11.1, 11.1)

Details:

Tomograms of purified rootlets reconstructed with Isonet

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

11. TS_purifiedrootlet_20200129

Category:

tilt series

Image format:

TIFF

No. of images or tilt series:

Image size:

(11520, 8184)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.693, 0.693)

Details:

Raw tomogram tifs of purified rootlets

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

12. Tomo_purifiedrootlet_20200129_deconv

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(760, 968)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(11.1, 11.1)

Details:

Tomogram of purified rootlet reconstructed with TOMdeconv

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

13. Tomo_purifiedrootlet_20200130_isonet

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(760, 968)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(11.1, 11.1)

Details:

tomogram of purified rootlet reconstructed with Isonet

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

14. TS_purifiedrootlet_20200130

Category:

tilt series

Image format:

TIFF

No. of images or tilt series:

Image size:

(11520, 8184)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.693, 0.693)

Details:

Raw tomogram tifs of purified rootlets

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

15. Tomo_purifiedrootlets_20200130_deconv

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(760, 968)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(11.1, 11.1)

Details:

tomogram of purified rootlet reconstructed with TOMdeconv

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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