EMPIAR-10876 - 2.3 A structure of the ATP-dependent chromatin remodeler Chd1 bound to the nucleosome in a nucleotide-free state [multiple data sets in TIFF, MRC and MRCS formats]

EMPIAR-10876

2.3 A structure of the ATP-dependent chromatin remodeler Chd1 bound to the nucleosome in a nucleotide-free state [multiple data sets in TIFF, MRC and MRCS formats]

Publication:

Nucleosome recognition and DNA distortion by the Chd1 remodeler in a nucleotide-free state

Nodelman IM, Das S, Faustino AM, Fried SD, Bowman GD, Armache JP

Nature structural & molecular biology 29 (2022) 121-129

PMID: 35173352

DOI: 10.1038/s41594-021-00719-x

Related EMDB entry:

EMD-25480 EMD-25483 EMD-25479 EMD-25481

Deposited:

2021-04-02

Released:

2022-04-01

Last modified:

2022-04-01

Imageset size:

4.74 TB

Imageset DOI:

10.6019/EMPIAR-10876

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe
micrographs - single frame
picked particles - single frame - processed

Image Sets

1. Unaligned frames of Chd1-bound nucleosomes collected on Gatan K3 in Super Resolution

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

6906

Image size:

(11520, 8184)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.54, 0.54)

Details:

Raw frames

Files:

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2. MotionCor2-aligned frames of Chd1-bound nucleosomes collected on Gatan K3

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

6906

Image size:

(7680, 5456)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.81, 0.81)

Details:

Data corrected with MotionCor2 v1.4.0

Files:

Archives and downloads the selected files into an uncompressed zip file.

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3. Processed subsets

Category:

picked particles - single frame - processed

Image format:

MRCS

No. of images or tilt series:

6906

Image size:

(5760, 4092)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.972, 0.972)

Details:

Multiple processed subsets

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

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