EMPIAR-10090 - Nucleotide-Driven Triple-State Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome [multiple data sets in MRC and MRCS formats]

EMPIAR-10090

Nucleotide-Driven Triple-State Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome [multiple data sets in MRC and MRCS formats]

Publication:

Structural mechanism for nucleotide-driven remodeling of the AAA-ATPase unfoldase in the activated human 26S proteasome

Zhu Y, Wang WL, Yu D, Ouyang Q, Lu Y, Mao Y

Nature communications 9 (2018)

PMID: 29636472

DOI: 10.1038/s41467-018-03785-w

Related EMDB entry:

EMD-8667 EMD-8665 EMD-8664 EMD-8662 EMD-8666 EMD-8663 EMD-8668

Deposited:

2017-04-09

Released:

2018-07-18

Last modified:

2018-07-18

Imageset size:

2.83 TB

Imageset DOI:

10.6019/EMPIAR-10090

Experimental metadata:

Download xml json

Contains:

micrographs - single frame
picked particles - multiframe - processed

Image Sets

1. Motion-corrected single frame micrographs of ATP-gS-bound human proteasome

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

8463

Image size:

(7420, 7676)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.75, 0.75)

Details:

Each micrograph is averaged from drift-corrected 30 frames with an accumulated dose of 30 electrons/anstrom^2.

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. Single-particle stacks of classified conformations

Category:

picked particles - multiframe - processed

Image format:

MRCS

No. of images or tilt series:

502384

Image size:

(560, 560)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.75, 0.75)

Details:

The single-particle datasets have been classified into six classes: SA, SB, SC, SD1, SD2, SD3. The SD20S is a combined data set of SD1, SD2 and SD3 to focus refinement on the 20S CP component of the human proteasome in an open-gate state.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Talks and Tutorials

EMPIAR Quick tour

Statistics

Publications

Re-use case study

EMPIAR in the news

Claim entries to your ORCiD

COVID-19 Data Portal

EMDB

PDBe

BioImage Archive

EMNavigator@PDBj

PDBj

RCSB@PDBj

EMDataResoruce@RCSB,EMDB,NCMI

Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

See all citations

Protein Data Bank Japan News

[2024-11-20]

224 new PDB entries have been released on 2024-11-20.

[2024-11-01]

A new portal integrating genome variants and protein structures has released

[2024-10-30]

[wwPDB] Deprecation of FTP File Download Protocol on November 1, 2024

[2024-10-25]

PDBj luncheon seminar at APBJC 2024

[2024-10-17]

[wwPDB] The Nobel Prize in Chemistry 2024