EMPIAR-12675 - FIB-SEM Rat brain tissue samples [multiple data sets in TIFF and PNG formats]

EMPIAR-12675

FIB-SEM Rat brain tissue samples [multiple data sets in TIFF and PNG formats]

Publication:

Contextual High-throughput 3D Volume Electron Microscopy Data Acquisition Using Artificial Intelligence

Fitzpatrick JAJ, Czymmek KJ, Hurník Konečná T, Jančík R, Slamková D, Přibyl B, Tomova C, Rotkina L, Burch-Smith T, Sviben S

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Related EMDB entry:

Deposited:

2025-04-01

Released:

2025-07-08

Last modified:

2025-07-08

Imageset size:

870.06 MB

Imageset DOI:

10.6019/EMPIAR-12675

Experimental metadata:

Download xml json

Contains:

reconstructed volumes
micrographs - single frame

Image Sets

1. FIB-SEM Rat brain tissue dataset

Category:

reconstructed volumes

Image format:

TIFF

No. of images or tilt series:

492

Image size:

(1549, 1104)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

---

Files:

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2. FIB-SEM Rat brain tissue dataset - annotation by user

Category:

micrographs - single frame

Image format:

PNG

No. of images or tilt series:

Image size:

(1549, 1104)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Manual annotation by user on the first slice of volume.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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