EMPIAR-11898 - Cryo-EM micrographs of engineered encapsulin P3P4 [multiple data sets in MRC and MRCS formats]

EMPIAR-11898

Cryo-EM micrographs of engineered encapsulin P3P4 [multiple data sets in MRC and MRCS formats]

Publication:

Structure of engineered encapsulin P3P4

Satler T, Jerala R

(---)

Related EMDB entry:

EMD-19521

Deposited:

2024-01-12

Released:

2024-03-26

Last modified:

2024-03-26

Imageset size:

74.37 GB

Imageset DOI:

10.6019/EMPIAR-11898

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe
micrographs - single frame
picked particles - single frame - processed

Image Sets

1. Unaligned multi-frame micrographs of engineered Encapsulin P3P4

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(1.2, 1.2)

Details:

Raw movies of engineered encapsulin P3P4, collected on Galcios 200kV (Cs 2.7), with pixel size 1.2 and total dose 24.37.

Files:

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2. Aligned multi-frame micrographs of engineered Encapsulin P3P4

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.2, 1.2)

Details:

Aligned multi-frame micrographs of engineered Encapsulin P3P4 and picked particles of box size 540 px.

Files:

Archives and downloads the selected files into an uncompressed zip file.

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Download a list of selected files.

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3. Picked particles of engineered Encapsulin P3P4

Category:

picked particles - single frame - processed

Image format:

MRCS

No. of images or tilt series:

3082

Image size:

(540, 540)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.2, 1.2)

Details:

3082 particles extracted from 50 micrographs.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

High-resolution ab initio reconstruction enables cryo-EM structure determination of small particles

Kim K, Li H, Clarke OB. (2025)

CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy.

Krentzel D, Elphick M, Domart MC, Peddie CJ, Laine RF, Shand C, Henriques R, Collinson LM, Jones ML. (2025)

Self-supervised learning for generalizable particle picking in cryo-EM micrographs.

Zamanos A, Koromilas P, Bouritsas G, Kastritis PL, Panagakis Y. (2025)

Laser flash melting cryo-EM samples to overcome preferred orientation.

Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ. (2025)

In situ structure determination of conformationally flexible targets using nextPYP.

Liu HF, Zhou Y, Huang Q, Martin J, Bartesaghi A. (2025)

CryoPROS: Correcting misalignment caused by preferred orientation using AI-generated auxiliary particles.

Zhang H, Zheng D, Wu Q, Yan N, Peng H, Hu Q, Peng Y, Yan Z, Shi Z, Bao C, Hu M. (2025)

Few-shot learning for non-vitrified ice segmentation.

Vivas-Lago A, Castaño-Díez D. (2025)

Automated removal of corrupted tilts in cryo-electron tomography.

Majtner T, Turoňová B. (2025)

Probabilistic single-particle cryo-EM ab initio 3D reconstruction in SIMPLE.

Van CTS, Reboul CF, Caesar JJE, Meana-Pañeda R, Lountos GT, Deme JC, Bryant OJ, Johnson S, Piczak CT, Valkov E, Lea SM, Elmlund H. (2025)

Reanalysis of cryo-EM data reveals ALK-cytokine assemblies with both 2:1 and 2:2 stoichiometries.

Felix J, De Munck S, Bazan JF, Savvides SN. (2025)

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