EMPIAR-11392 - 3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning [7 reconstructed volumes in MRC format]

EMPIAR-11392

3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning [7 reconstructed volumes in MRC format]

Publication:

3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning

Dyhr MCA, Sadeghi M, Moynova R, Knappe C, Kepsutlu Çakmak B, Werner S, Schneider G, McNally J, Noe F, Ewers H

bioRxiv (2022)

DOI: 10.1101/2022.05.16.492055

Related EMDB entry:

Deposited:

2023-01-26

Released:

2023-01-30

Last modified:

2023-01-30

Imageset size:

23.46 GB

Imageset DOI:

10.6019/EMPIAR-11392

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. Tomographic reconstruction of plunge-frozen CRFK cell

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(1284, 1324)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(9.8, 9.8)

Details:

Representative datasets from the manuscript "3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning", https://doi.org/10.1101/2022.05.16.492055
Included are tomographic reconstructions of plunge-frozen CRFK cells, as well as corresponding raw tilt series and log files.

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Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

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