EMPIAR-11344 - Cryo electron tomography of chromatin condensed by PRC1-CBX8 [multiple data sets in MRC format]

EMPIAR-11344

Cryo electron tomography of chromatin condensed by PRC1-CBX8 [multiple data sets in MRC format]

Publication:

The three-dimensional structure of chromatin condensed by PRC1 is porous and accessible

Uckelmann M, Levina V, Taveneau C, Ng XH, Pandey V, Zhang Q, Flannigan S, Li M, Das PP, de Marco A, Davidovich C

(---)

Related EMDB entry:

EMD-29022

Deposited:

2022-12-08

Released:

2024-07-16

Last modified:

2024-07-16

Imageset size:

9.34 GB

Imageset DOI:

10.6019/EMPIAR-11344

Experimental metadata:

Download xml json

Contains:

micrographs - single frame
tilt series

Image Sets

1. motion-corrected micrographs of tomogram #1

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.32, 1.32)

Details:

---

Files:

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2. motion-corrected micrographs of tomogram #2

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.32, 1.32)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

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3. stack of tilt series for tomogram #1

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.32, 1.32)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. stack of tilt series for tomogram #2

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.32, 1.32)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Zamanos A, Koromilas P, Bouritsas G, Kastritis PL, Panagakis Y. (2025)

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CryoPROS: Correcting misalignment caused by preferred orientation using AI-generated auxiliary particles.

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Few-shot learning for non-vitrified ice segmentation.

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Automated removal of corrupted tilts in cryo-electron tomography.

Majtner T, Turoňová B. (2025)

Probabilistic single-particle cryo-EM ab initio 3D reconstruction in SIMPLE.

Van CTS, Reboul CF, Caesar JJE, Meana-Pañeda R, Lountos GT, Deme JC, Bryant OJ, Johnson S, Piczak CT, Valkov E, Lea SM, Elmlund H. (2025)

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