EMPIAR-11113 - Integration of an event-driven Timepix3 hydrid pixel detector into a cryo-EM workflow [multiple data sets in MRCS and TPX3 formats]

EMPIAR-11113

Integration of an event-driven Timepix3 hydrid pixel detector into a cryo-EM workflow [multiple data sets in MRCS and TPX3 formats]

Publication:

Integration of an event-driven Timepix3 hydrid pixel detector into a cryo-EM workflow

van Schayck JP, Zhang Y, Knoops K, Peters PJ, Ravelli RBG

Microscopy & Microanalysis (---)

Related EMDB entry:

EMD-15389

Deposited:

2022-06-09

Released:

2023-01-30

Last modified:

2023-02-01

Imageset size:

2.67 TB

Imageset DOI:

10.6019/EMPIAR-11113

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe
micrographs - single frame

Image Sets

1. Processed but unaligned Timepix3 data. Processed with CNN-ToT event localisation, chip edge correction, deterministic blur (sigma=0.5) and stored at two times super resolution and gain corrected.

Category:

micrographs - multiframe

Image format:

MRCS

No. of images or tilt series:

2980

Image size:

(1032, 1032)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.6, 0.6)

Details:

Processed Timepix3 data. Processed with CNN-ToT event localisation, chip edge correction, deterministic blur (sigma=0.5) and stored at two times super resolution. Split into 50 frames. Frames have a fluence of ~1.0 e-/A^2. Frames have been gain corrected.

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2. Raw, unprocessed Timepix3 data.

Category:

micrographs - single frame

Image format:

TPX3

No. of images or tilt series:

2978

Image size:

(512, 512)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(1.2, 1.2)

Details:

These are raw, unprocessed Timepix3 data. Recorded 1.5 s at a flux of 29 e/A^2/s with a 1.2 A pixelsize. Processing can be done using tpx3HitParser (https://doi.org/10.5281/zenodo.3641237) and generation of image frames using tpx3EventViewer (https://doi.org/10.5281/zenodo.3693989).

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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