EMPIAR-10510 - CryoEM SPA of Apo-SrpI Encapsulin Complex (Raw Frames) [2967 multi-frame micrographs composed of 39 frames each in TIFF format]

EMPIAR-10510

CryoEM SPA of Apo-SrpI Encapsulin Complex (Raw Frames) [2967 multi-frame micrographs composed of 39 frames each in TIFF format]

Publication:

Discovery and characterization of a novel family of prokaryotic nanocompartments involved in sulfur metabolism

Nichols RJ, LaFrance BJ, Phillips NR, Oltrogge LM, Valentin-Alvarado LE, Bischoff AJ, Nogales E, Savage DF

BioRxiv (2020)

DOI: 10.1101/2020.05.24.113720

Related EMDB entry:

EMD-22095

Deposited:

2020-08-28

Released:

2021-03-24

Last modified:

2021-03-24

Imageset size:

1.64 TB

Imageset DOI:

10.6019/EMPIAR-10510

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Raw Movies for Apo-SrpI Encapsulin collected on 200kV Arctica

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

2967

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(1.14, 1.14)

Details:

Gain Reference for BACEM: pixel width 0.57 pixel height 0.57. The file called "SuperRef_19Sep22_shell_0001.dm4" is the super resolution gain reference file for the associated tif file dataset. This reference was collected on Sept 22, 2019 immediately before beginning data collection.

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Quick Links

Talks and Tutorials

EMPIAR Quick tour

Statistics

Publications

Re-use case study

EMPIAR in the news

Claim entries to your ORCiD

COVID-19 Data Portal

EMDB

PDBe

BioImage Archive

EMNavigator@PDBj

PDBj

RCSB@PDBj

EMDataResoruce@RCSB,EMDB,NCMI

Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

See all citations

Protein Data Bank Japan News

[2020-07-15]

PDBj는 2020 년 7 월에 20 주년을 맞이했습니다.

[2019-02-20]

[wwPDB] 고분자결정구조 등록 시 PDBx/mmCIF 형식 파일만 허용됩니다.

[2017-11-16]

11 월 24 일 ~ 26 일, 텔레콤 센터 빌딩 (도쿄 오다이바)에서 개최되는 「사이언스 아고라 2017」에 출전합니다

[2016-01-28]

News on 2016-1-11

See all news