EMPIAR-10497 - Cryo-EM structures of four polymorphic TDP-43 amyloid cores [multiple data sets in MRC format]

EMPIAR-10497

Cryo-EM structures of four polymorphic TDP-43 amyloid cores [multiple data sets in MRC format]

Publication:

Cryo-EM structures of four polymorphic TDP-43 amyloid cores

Cao Q, Boyer DR, Sawaya MR, Ge P, Eisenberg DS

Nature structural & molecular biology 26 (2019) 619-627

PMID: 31235914

DOI: 10.1038/s41594-019-0248-4

Related EMDB entry:

EMD-9349 EMD-0334 EMD-9339 EMD-9350

Deposited:

2020-08-18

Released:

2020-08-28

Last modified:

2023-10-09

Imageset size:

4.55 TB

Imageset DOI:

10.6019/EMPIAR-10497

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned dose fractionated frames of TDP-43 SegA amyloid fibrils

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

6951

Image size:

(7676, 7420)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.535, 0.535)

Details:

Unaligned gzipped .mrc frames from 3 Krios sessions. Cs 2.7, 300 keV. Energy filtered (20 eV). K2 super-resolution frames. Dose rate 1.2 e/A^2/frame. 5 frames/sec. 8 sec exposure. The gain files in movies directory are already flipped appropriately. Coordinate files are EMAN2 helixboxer format.

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. Unaligned dose fractionated frames of TDP-43 SegB A315E amyloid fibrils

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

3542

Image size:

(7676, 7420)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.535, 0.535)

Details:

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Talks and Tutorials

EMPIAR Quick tour

Statistics

Publications

Re-use case study

EMPIAR in the news

Claim entries to your ORCiD

COVID-19 Data Portal

EMDB

PDBe

BioImage Archive

EMNavigator@PDBj

PDBj

RCSB@PDBj

EMDataResoruce@RCSB,EMDB,NCMI

Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

See all citations

Protein Data Bank Japan News

[2020-07-15]

PDBj는 2020 년 7 월에 20 주년을 맞이했습니다.

[2019-02-20]

[wwPDB] 고분자결정구조 등록 시 PDBx/mmCIF 형식 파일만 허용됩니다.

[2017-11-16]

11 월 24 일 ~ 26 일, 텔레콤 센터 빌딩 (도쿄 오다이바)에서 개최되는 「사이언스 아고라 2017」에 출전합니다

[2016-01-28]

News on 2016-1-11

See all news