EMPIAR-10837 - CryoEM SPA dataset for NB21, SARS-Cov-2 and NB105 trimeric complex [5874 multi-frame micrographs composed of 45 frames each in TIFF format]

EMPIAR-10837

CryoEM SPA dataset for NB21, SARS-Cov-2 and NB105 trimeric complex [5874 multi-frame micrographs composed of 45 frames each in TIFF format]

Publication:

Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes

Sun D, Sang Z, Kim YJ, Xiang Y, Cohen T, Belford AK, Huet A, Conway JF, Sun J, Taylor DJ, Schneidman-Duhovny D, Zhang C, Huang W, Shi Y

Nature communications 12 (2021) 1-14

PMID: 34344900

DOI: 10.1038/s41467-021-24963-3

Related EMDB entry:

EMD-23782

Deposited:

2021-10-25

Released:

2021-11-02

Last modified:

2021-11-02

Imageset size:

2.81 TB

Imageset DOI:

10.6019/EMPIAR-10837

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. SARS-CoV-2 RBD in complex with nanobody 105 and nobody 21

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

5874

Image size:

(11520, 8184)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.4363, 0.4363)

Details:

---

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Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

See all citations

Protein Data Bank Japan News

[2024-10-03]

[wwPDB] Access IHM structures at wwPDB DOI Landing Pages

[2024-10-02]

283 new PDB entries have been released on 2024-10-02.

[2024-09-18]

[wwPDB] Deprecation of FTP File Download Protocol on November 1, 2024

[2024-09-12]

[wwPDB] Paper Published on CryoEM Archiving and Validation Recommendations

[2024-09-11]

[wwPDB] PDB Archive Serves Structures Determined by Integrative and Hybrid Methods (IHM)