EMPIAR-10822 - Cryo Electron Tomography of isolated S-layer patches from Ca.M.lanthanidiphila [multiple data sets in MRC format]

EMPIAR-10822

Cryo Electron Tomography of isolated S-layer patches from Ca.M.lanthanidiphila [multiple data sets in MRC format]

Publication:

The Polygonal Cell Shape and Surface Protein Layer of Anaerobic Methane-Oxidizing Methylomirabilis lanthanidiphila Bacteria

Gambelli L, Mesman R, Versantvoort W, Diebolder CA, Engel A, Evers W, Jetten MSM, Pabst M, Daum B, van Niftrik L

Frontiers in microbiology 12 (2021)

PMID: 34925275

DOI: 10.3389/fmicb.2021.766527

Related EMDB entry:

EMD-13670

Deposited:

2021-09-28

Released:

2021-10-25

Last modified:

2022-02-25

Imageset size:

49.69 GB

Imageset DOI:

10.6019/EMPIAR-10822

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. Reconstructed tomogram of isolated Ca. M.lanthanidiphila S-layer patches

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

672

Image size:

(4092, 5760)

Pixel type:

SIGNED 16 BIT INTEGER

Pixel spacing:

(2.62631, 2.62631)

Details:

Aquisition parameters in the corresponding mdoc file. Tilt-angles for missing wedge compensation in the corresponding tlt file

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2. Reconstructed tomogram of isolated Ca. M.lanthanidiphila S-layer patches

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

382

Image size:

(4092, 5760)

Pixel type:

SIGNED 16 BIT INTEGER

Pixel spacing:

(2.62631, 2.62631)

Details:

Aquisition parameters in the corresponding mdoc file. Tilt-angles for missing wedge compensation in the corresponding tlt file

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

High-resolution ab initio reconstruction enables cryo-EM structure determination of small particles

Kim K, Li H, Clarke OB. (2025)

CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy.

Krentzel D, Elphick M, Domart MC, Peddie CJ, Laine RF, Shand C, Henriques R, Collinson LM, Jones ML. (2025)

CryoEMNet driven symmetry-aware molecular reconstruction through deep learning enhanced electron microscopy.

Arora S, Pan SH, Kumar S, Singh SK, Chauhan U, Alhalabi W, Arya V, Alsulami BS, Hsu CH, Chui KT, Gupta BB. (2025)

PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modeling and machine learning.

Costa-Gomes B, Greer J, Juraschko N, Parkhurst J, Mirecka J, Famili M, Rangel-Smith C, Strickson O, Lowe A, Basham M, Burnley T. (2025)

Self-supervised learning for generalizable particle picking in cryo-EM micrographs.

Zamanos A, Koromilas P, Bouritsas G, Kastritis PL, Panagakis Y. (2025)

Laser flash melting cryo-EM samples to overcome preferred orientation.

Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ. (2025)

In situ structure determination of conformationally flexible targets using nextPYP.

Liu HF, Zhou Y, Huang Q, Martin J, Bartesaghi A. (2025)

EMICSS: added-value annotations for EMDB entries.

Duraisamy AK, Fonseca N, Kleywegt GJ, Patwardhan A, Morris KL. (2025)

Global conformations of <i>Pichia pastoris</i> complex I are distinguished by the binding of a unique interdomain bridging subunit.

Lee CS, Grba DN, Wright JJ, Ivanov BS, Hirst J. (2025)

Overcoming Preferred Orientation in Cryo-EM With Ultrasonic Excitation During Vitrification

Williams HM, Curtis WA, Haubner M, Hruby J, Drabbels M, Lorenz UJ. (2025)

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