EMPIAR-10211 - mouse MDA5-dsRNA filamemts in complex of 2mM ADP-AlF4 [multiple data sets in MRC format]

This entry has been removed from PDBj storage. Please download it from EMPIAR-EBI.

EMPIAR-10211

mouse MDA5-dsRNA filamemts in complex of 2mM ADP-AlF4 [multiple data sets in MRC format]

Publication:

Cryo-EM Structures of MDA5-dsRNA Filaments at Different Stages of ATP Hydrolysis

Yu Q, Qu K, Modis Y.E

Molecular cell 72 (2018) 999-1012.e6

PMID: 30449722

DOI: 10.1016/j.molcel.2018.10.012

Related EMDB entry:

EMD-0023

Deposited:

2018-09-24

Released:

2021-04-14

Last modified:

2021-06-29

Imageset size:

195.29 GB

Imageset DOI:

10.6019/EMPIAR-10211

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. mouse MDA5-dsRNA filaments in complex with 2mM ADP-AlF4_data1

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

323

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.07, 1.07)

Details:

Dose weighted and aligned single-frame micrographs by MotionCorr2
Dataset 1 at 1.07 (Å) Pixel size. Picked particles are raw particles from RELION Autopick. Not final particles for reconstruction.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. mouse MDA5-dsRNA filaments in complex with 2mM ADP-AlF4_data2_rescaled

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

1381

Image size:

(4152, 4152)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.07, 1.07)

Details:

Dose weighted and aligned single-frame micrographs by MotionCorr2.
The 2nd dataset under fold /data/micrographs_rescale at 1.07 Å pixel size was rescaled from /data/micrographs_DW at pixel size 1.085 Å . Picked particles are raw particles from RELION Autopick. Not final particles for reconstruction.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. mouse MDA5-dsRNA filaments in complex with 2mM ADP-AlF4_data2

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

1381

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.085, 1.085)

Details:

Dose weighted and aligned single-frame micrographs by MotionCorr2.
The 2nd dataset under fold /data/micrographs_DW at pixel size 1.085 Å is the original file(not rescaled). Picked particles are raw particles from RELION Autopick. Not final particles for reconstruction.

Files:

This entry cannot be downloaded from PDBj.

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Talks and Tutorials

EMPIAR Quick tour

Statistics

Publications

Re-use case study

EMPIAR in the news

Claim entries to your ORCiD

COVID-19 Data Portal

EMDB

PDBe

BioImage Archive

EMNavigator@PDBj

PDBj

RCSB@PDBj

EMDataResoruce@RCSB,EMDB,NCMI

Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

See all citations

Protein Data Bank Japan News

[2024-11-13]

236 new PDB entries have been released on 2024-11-13.

[2024-11-01]

A new portal integrating genome variants and protein structures has released

[2024-10-30]

[wwPDB] Deprecation of FTP File Download Protocol on November 1, 2024

[2024-10-25]

PDBj luncheon seminar at APBJC 2024

[2024-10-17]

[wwPDB] The Nobel Prize in Chemistry 2024