EMPIAR-12604 - Demo apoferritin data for Magellon [multiple data sets in MRC and TIFF formats]

EMPIAR-12604

Demo apoferritin data for Magellon [multiple data sets in MRC and TIFF formats]

Publication:

Magellon – an extensible platform for cryo-EM data visualization, management, and processing

Stagg SM

(---)

Related EMDB entry:

EMD-49574

Deposited:

2025-02-21

Released:

2025-07-25

Last modified:

2025-07-25

Imageset size:

117.16 GB

Imageset DOI:

10.6019/EMPIAR-12604

Experimental metadata:

Download xml json

Contains:

micrographs - single frame
micrographs - multiframe

Image Sets

1. Unaligned micrographs of data collection session of apoferritin

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

308

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

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2. Unaligned movies of apoferritin

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

218

Image size:

(8192, 8192)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.395, 0.395)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. Gain for correction of movie frames

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

Image size:

(8192, 8192)

Pixel type:

16 BIT FLOAT

Pixel spacing:

(None, None)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

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Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

See all citations

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