EMPIAR-12519 - Cryo electron micrographs of glomalin (a group I chaperonin) from Rhizophagus irregularis BGC BJ09 [multiple data sets in TIFF, MRC and MRCS formats]

EMPIAR-12519

Cryo electron micrographs of glomalin (a group I chaperonin) from Rhizophagus irregularis BGC BJ09 [multiple data sets in TIFF, MRC and MRCS formats]

Publication:

Soil aggregates stability is evidently enhanced by super-binding of the N-terminal disordered tail of glomalin to soil minerals

Jia M, Wang Y, He J, Chou SH, Luo D, Fang L, Hou J, Fan Y, Zhang W, Chen H, Zhou D, Liu Y, Feng Y, Koopal L, Tan W

Soil Biology and Biochemistry 210 (2025)

DOI: 10.1016/j.soilbio.2025.109908

Related EMDB entry:

Deposited:

2024-12-26

Released:

2025-08-05

Last modified:

2025-08-05

Imageset size:

2.40 TB

Imageset DOI:

10.6019/EMPIAR-12519

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe
micrographs - single frame
picked particles - single frame - unprocessed

Image Sets

1. Cryo electron micrographs of glomalin (a group I chaperonin) from Rhizophagus irregularis BGC BJ09

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

3806

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(1.1, 1.1)

Details:

---

Files:

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2. Gain reference for cryo electron micrographs of glomalin (a group I chaperonin) from Rhizophagus irregularis BGC BJ09

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(None, None)

Details:

This gain reference doesn't need rotation and flipping.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

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3. Particles for cryo electron micrographs of glomalin (a group I chaperonin) from Rhizophagus irregularis BGC BJ09

Category:

picked particles - single frame - unprocessed

Image format:

MRCS

No. of images or tilt series:

2890

Image size:

(11520, 8184)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(1.1, 1.1)

Details:

The folder cryosparc/J1 is "Imported particles" of CryoSPARC-v4.3.1, and the particles is imported from "Particle extraction" of relion-v3.1.3.
The folder cryosparc/J14 is "Homogeneous Refinement" of CryoSPARC-v4.3.1, and this "Homogeneous Refinement" which imposed D7 symmetry is the final refinement of glomalin at a resolution of 2.85 angstrom.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

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Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

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