EMPIAR-12377 - Array Tomography of zebrafish axillary lymphoid organ - an external, experimentally accessible immune organ in the zebrafish [multiple data sets in TIFF format]

EMPIAR-12377

Array Tomography of zebrafish axillary lymphoid organ - an external, experimentally accessible immune organ in the zebrafish [multiple data sets in TIFF format]

Publication:

The axillary lymphoid organ - an external, experimentally accessible immune organ in the zebrafish

Castranova D, Kenton MI, Kraus A, Dell CW, Park JS, Galanternik MV, Park G, Lumbantobing DN, Dye L, Marvel M, Iben J, Taimatsu K, Pham V, Willms RJ, Blevens L, Robertson TF, Hou Y, Huttenlocher A, Foley E, Parenti LR, Frazer JK, Narayan K, Weinstein BM

bioRxiv (2024)

DOI: 10.1101/2024.07.25.605139

Related EMDB entry:

Deposited:

2024-09-20

Released:

2024-11-06

Last modified:

2024-11-06

Imageset size:

11.35 GB

Imageset DOI:

10.6019/EMPIAR-12377

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. Aligned and contrast inverted array tomography images of heavy-metal stained, resin-embedded club cells from a zebrafish lobe

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

201

Image size:

(3868, 2732)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(100.0, 100.0)

Details:

60 nm z sectioning

Files:

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2. Aligned and contrast inverted array tomography images of heavy-metal stained, resin-embedded immune cells from a zebrafish lobe

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

169

Image size:

(2250, 2256)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(100.0, 100.0)

Details:

60 nm z sectioning

Files:

Archives and downloads the selected files into an uncompressed zip file.

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3. Aligned and contrast inverted array tomography images of heavy-metal stained, resin-embedded Merkel cells from a zebrafish lobe

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

Image size:

(1750, 1376)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(100.0, 100.0)

Details:

60 nm z sectioning

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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4. Aligned and contrast inverted array tomography images of heavy-metal stained, resin-embedded solitary chemosensory cells (SCC) type 1 from a zebrafish lobe

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

111

Image size:

(1654, 1443)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(100.0, 100.0)

Details:

60 nm z sectioning

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

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5. Aligned and contrast inverted array tomography images of heavy-metal stained, resin-embedded solitary chemosensory cells type 2 (SCC2) from a zebrafish lobe

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

105

Image size:

(1965, 1461)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(100.0, 100.0)

Details:

60 nm z sectioning

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

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6. Aligned and contrast inverted array tomography images of heavy-metal stained, resin-embedded Goblet cells from a zebrafish lobe

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

169

Image size:

(5360, 1508)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(100.0, 100.0)

Details:

60 nm z sectioning

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

7. Aligned and contrast inverted array tomography stack overview of zebrafish lobe

Category:

micrographs - single frame

Image format:

TIFF

No. of images or tilt series:

169

Image size:

(8781, 4770)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(250.0, 250.0)

Details:

Z sectioning at 60 nm and imaged at 25 nm xy pixel sampling

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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It is possible to download files by specifying the file list with rsync command, etc.

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