EMPIAR-12160 - Comparative 3D ultrastructure of Plasmodium falciparum gametocytes [multiple data sets in TIFF format]

EMPIAR-12160

Comparative 3D ultrastructure of Plasmodium falciparum gametocytes [multiple data sets in TIFF format]

Publication:

Comparative 3D ultrastructure ofPlasmodium falciparumgametocytes

Evers F, Roverts R, Boshoven C, Kea-te Lindert M, Verhoef JM, Sinden RE, Akiva A, Kooij TW

bioRxiv (2023)

DOI: 10.1101/2023.03.10.531920

Related EMDB entry:

Deposited:

2024-03-24

Released:

2024-11-06

Last modified:

2024-11-06

Imageset size:

239.12 GB

Imageset DOI:

10.6019/EMPIAR-12160

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Pf_Gametocyte_#3

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

499

Image size:

(1833, 893)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum gametocyte. Representative cell depicted in Fig. 1A. Voxel Size 5nm x 5nm x 15nm

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2. Raw Image Stack Gametocyte Sample 1

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

2627

Image size:

(4268, 2784)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Raw micrograph series for gametocyte sample #1. Voxel Size 5nm x 5nm x 15nm

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3. Raw Image Stack Gametocyte Sample 2

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

952

Image size:

(4428, 3804)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Raw micrograph series for gametocyte sample #2. Voxel Size 5nm x 5nm x 15nm

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4. Raw Image Stack Gametocyte Sample 3

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

901

Image size:

(4405, 2880)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Raw micrograph series for gametocyte sample #3. Voxel Size 5nm x 5nm x 15nm

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5. Pf_Gametocyte_#16

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

804

Image size:

(1296, 1392)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum gametocyte. Representative cell depicted in Fig. 1B. Voxel Size 5nm x 5nm x 15nm

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6. Pf_Schizont_#1

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

410

Image size:

(1230, 1386)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum schizont. Representative cell depicted in Fig. 1C. Voxel Size 5nm x 5nm x 15nm

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7. Pf_Schizont_#12

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

421

Image size:

(1476, 1314)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum schizont. Representative cell depicted in Fig. 1D. Voxel Size 5nm x 5nm x 15nm

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8. Pf_Gametocyte_#9

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

594

Image size:

(1416, 1686)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Representative cell depicted in Fig. 4C / Supp. Fig. 2 Row 2. Voxel Size 5nm x 5nm x 15nm

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9. Pf_Gametocyte_#4

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

624

Image size:

(1984, 1060)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Representative cell depicted in Supp Fig.1A Upper Cell. Voxel Size 5nm x 5nm x 15nm

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10. Pf_Gametocyte_#13

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

405

Image size:

(1290, 2010)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Representative cell depicted in Supp Fig.1A Lower Cell. Voxel Size 5nm x 5nm x 15nm

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11. Pf_Gametocyte_#1

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

568

Image size:

(2596, 1028)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Representative cell depicted in Supp Fig.2 First Row. Voxel Size 5nm x 5nm x 15nm

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12. Pf_Gametocyte_#2

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

520

Image size:

(1536, 1128)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Representative cell depicted in Supp Fig.2 Third Row. Voxel Size 5nm x 5nm x 15nm

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13. Pf_Gametocyte_#7

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

643

Image size:

(1368, 990)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Representative cell depicted in Supp Fig.2 Fourth Row. Voxel Size 5nm x 5nm x 15nm

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14. Pf_Gametocyte_#10

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

677

Image size:

(2568, 1146)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Representative cell depicted in Supp Fig.2 Fifth Row. Voxel Size 5nm x 5nm x 15nm

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15. Pf_Gametocyte_#15

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

590

Image size:

(1314, 1596)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Representative cell depicted in Supp Fig.6. Voxel Size 5nm x 5nm x 15nm

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16. Pf_Gametocyte_#18

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

566

Image size:

(2616, 1128)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Representative cell depicted in Supp Fig.11B. Voxel Size 5nm x 5nm x 15nm

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17. Pf_Gametocyte_#5

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

614

Image size:

(1996, 752)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Representative cell depicted in Supp Fig.11C. Voxel Size 5nm x 5nm x 15nm

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18. Pf_Gametocyte_#6

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

414

Image size:

(2028, 1028)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Cell was used for nuclear rendering in Fig. 8. Voxel Size 5nm x 5nm x 15nm

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19. Pf_Gametocyte_#8

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

973

Image size:

(2178, 1356)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Cell was used for nuclear rendering in Fig. 8. Voxel Size 5nm x 5nm x 15nm

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20. Pf_Gametocyte_#11

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

505

Image size:

(2016, 846)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Cell was used for nuclear rendering in Fig. 8. Voxel Size 5nm x 5nm x 15nm

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21. Pf_Gametocyte_#19

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

511

Image size:

(2064, 918)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Cell was used for nuclear rendering in Fig. 8. Voxel Size 5nm x 5nm x 15nm

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22. Pf_Gametocyte_#14

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

267

Image size:

(1620, 1794)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Micrograph series of Plasmodium falciparum Gametocyte. Cell was used for nuclear rendering in Fig. 8. Voxel Size 5nm x 5nm x 15nm

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23. Sample6_UnprocessedStack_Inlens_P1

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

348

Image size:

(13044, 4019)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Raw micrograph series for Sample #6. Part 1/3. Voxel Size 5nm x 5nm x 15nm

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24. Sample6_UnprocessedStack_InLens_P2

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

1423

Image size:

(12893, 3728)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Raw micrograph series for Sample #6. Part 2/3. Voxel Size 5nm x 5nm x 15nm

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25. Sample6_UnprocessedStack_InLens_P3

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

1234

Image size:

(10487, 4683)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Raw micrograph series for Sample #6. Part 3/3. Voxel Size 5nm x 5nm x 15nm

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26. Gametocytes #20-#50

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Image Stacks corresponding to additional gametocyte stacks that were used for quantification but no rendered in their entirety in any figures. Voxel Size 5nm x 5nm x 15nm

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27. Aligned Serial Sectioning Image Stack Gametocytes

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

Image size:

(9077, 14470)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(50.0, 50.0)

Details:

Aligned serial sectioning micrograph series for Sample #1. Voxel Size 5nm x 5nm x 80nm

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