EMPIAR-12121 - Particle stacks from heart-derived AL amyloid (AL59) cryo-EM data [multiple data sets in MRCS format]

EMPIAR-12121

Particle stacks from heart-derived AL amyloid (AL59) cryo-EM data [multiple data sets in MRCS format]

Publication:

Helical superstructures between amyloid and collagen VI in heart-derived fibrils from a patient with Light Chain Amyloidosis

Schulte T, Speranzini V, Chaves-Sanjuan A, Milazzo M, Ricagno S

(---)

Related EMDB entry:

EMD-50270

Deposited:

2024-06-06

Released:

2024-07-19

Last modified:

2024-07-19

Imageset size:

130.08 GB

Imageset DOI:

10.6019/EMPIAR-12121

Experimental metadata:

Download xml json

Contains:

picked particles - single frame - processed
picked particles - single frame - unprocessed

Image Sets

1. Initial set of segments of the AL59 reconstructions

Category:

picked particles - single frame - processed

Image format:

MRCS

No. of images or tilt series:

240985

Image size:

(340, 340)

Pixel type:

UNSIGNED 32 BIT INTEGER

Pixel spacing:

(0.889, 0.889)

Details:

---

Files:

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2. Set of segments of the AL59 'straight' polymorph reconstruction (EMD-50270)

Category:

picked particles - single frame - unprocessed

Image format:

MRCS

No. of images or tilt series:

37904

Image size:

(340, 340)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(0.889, 0.889)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. Set of segments of the AL59 'bent' polymorph reconstruction (EMD-50271)

Category:

picked particles - single frame - unprocessed

Image format:

MRCS

No. of images or tilt series:

10521

Image size:

(340, 340)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(0.889, 0.889)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. Set of segments of the AL59 'mixed' polymorph reconstruction (EMD-50272)

Category:

picked particles - single frame - unprocessed

Image format:

MRCS

No. of images or tilt series:

12355

Image size:

(340, 340)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(0.889, 0.889)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

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