EMPIAR-11719 - Cryogenic electron microscopy spa datset of a membrane-bound menaquinol:organohalide oxidoreductase [13783 micrographs in MRC format]

EMPIAR-11719

Cryogenic electron microscopy spa datset of a membrane-bound menaquinol:organohalide oxidoreductase [13783 micrographs in MRC format]

Publication:

Structure of a membrane-bound menaquinol:organohalide oxidoreductase

Ekundayo BE, Ni DC, Stahlberg H

nature communications (2023)

DOI: 10.1101/2023.07.04.547610

Related EMDB entry:

EMD-18148

Deposited:

2023-10-09

Released:

2023-10-23

Last modified:

2023-10-23

Imageset size:

861.45 GB

Imageset DOI:

10.6019/EMPIAR-11719

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. Aligned DW micrographs of a membrane-bound menaquinol:organohalide oxidoreductase RDH complex (cryoEM SPA)

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

13783

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.51, 0.51)

Details:

Titan Krios
Pixel size (A)
0.51

Accelerating Voltage (kV)
300

Spherical Aberration (mm)
2.7

Total exposure dose (e/A^2)
60

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Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)