EMPIAR-11038 - Human platelets in presence of SARS-CoV-2 spike protein [6 reconstructed volumes in MRC format]

EMPIAR-11038

Human platelets in presence of SARS-CoV-2 spike protein [6 reconstructed volumes in MRC format]

Publication:

Direct Cryo-ET observation of platelet deformation induced by SARS-CoV-2 spike protein

Kuhn CC, Basnet N, Bodakuntla S, Alvarez-Brecht P, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertümpfel C, Mizuno N

Nature communications 14 (2023)

PMID: 36739444

DOI: 10.1038/s41467-023-36279-5

Related EMDB entry:

EMD-26796 EMD-26794

Deposited:

2022-04-28

Released:

2024-11-21

Last modified:

2024-11-21

Imageset size:

16.40 GB

Imageset DOI:

10.6019/EMPIAR-11038

Experimental metadata:

Download xml json

Contains:

reconstructed volumes

Image Sets

1. Reconstructed 4x binned tomograms from human platelets in presence of SARS-CoV-2 spike protein

Category:

reconstructed volumes

Image format:

MRC

No. of images or tilt series:

Image size:

(1023, 1440)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(11.04, 11.04)

Details:

The reconstructed volumes were obtained from 61 tilts

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Citations

High-resolution ab initio reconstruction enables cryo-EM structure determination of small particles

Kim K, Li H, Clarke OB. (2025)

CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy.

Krentzel D, Elphick M, Domart MC, Peddie CJ, Laine RF, Shand C, Henriques R, Collinson LM, Jones ML. (2025)

CryoEMNet driven symmetry-aware molecular reconstruction through deep learning enhanced electron microscopy.

Arora S, Pan SH, Kumar S, Singh SK, Chauhan U, Alhalabi W, Arya V, Alsulami BS, Hsu CH, Chui KT, Gupta BB. (2025)

PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modeling and machine learning.

Costa-Gomes B, Greer J, Juraschko N, Parkhurst J, Mirecka J, Famili M, Rangel-Smith C, Strickson O, Lowe A, Basham M, Burnley T. (2025)

Self-supervised learning for generalizable particle picking in cryo-EM micrographs.

Zamanos A, Koromilas P, Bouritsas G, Kastritis PL, Panagakis Y. (2025)

Laser flash melting cryo-EM samples to overcome preferred orientation.

Straub MS, Harder OF, Mowry NJ, Barrass SV, Hruby J, Drabbels M, Lorenz UJ. (2025)

In situ structure determination of conformationally flexible targets using nextPYP.

Liu HF, Zhou Y, Huang Q, Martin J, Bartesaghi A. (2025)

EMICSS: added-value annotations for EMDB entries.

Duraisamy AK, Fonseca N, Kleywegt GJ, Patwardhan A, Morris KL. (2025)

Global conformations of <i>Pichia pastoris</i> complex I are distinguished by the binding of a unique interdomain bridging subunit.

Lee CS, Grba DN, Wright JJ, Ivanov BS, Hirst J. (2025)

Overcoming Preferred Orientation in Cryo-EM With Ultrasonic Excitation During Vitrification

Williams HM, Curtis WA, Haubner M, Hruby J, Drabbels M, Lorenz UJ. (2025)

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