EMPIAR-10640 - Cryo-EM of Multiple System Atrophy seeded assembly of alpha-synuclein filaments [multiple data sets in TIFF and MRCS formats]

EMPIAR-10640

Cryo-EM of Multiple System Atrophy seeded assembly of alpha-synuclein filaments [multiple data sets in TIFF and MRCS formats]

Publication:

Seeded assembly in vitro does not replicate the structures of α-synuclein filaments from multiple system atrophy

Lövestam S, Schweighauser M, Matsubara T, Murayama S, Tomita T, Ando T, Hasegawa K, Yoshida M, Tarutani A, Hasegawa M, Goedert M, Scheres S

FEBS Open Bio (2021)

PMID: 33548114

DOI: 10.1002/2211-5463.13110

Related EMDB entry:

EMD-12265 EMD-12266 EMD-12267 EMD-12268 EMD-12264 EMD-12269

Deposited:

2021-02-11

Released:

2021-03-05

Last modified:

2021-03-05

Imageset size:

1.11 TB

Imageset DOI:

10.6019/EMPIAR-10640

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe
picked particles - single frame - processed

Image Sets

1. Unaligned movies of alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 1

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

2175

Image size:

(3838, 3710)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(1.1, 1.1)

Details:

Unaligned and non-gain corrected, 40-frame movies (K2 counting mode) were collected with EPU using a Titan Krios operating at 300 kV (LMB Krios II). The exposure was at 36.7 e/A^2) with a defocus range of -2.8 to -1.5 um. Micrographs were manually picked in relion using start-end helical picking. Gain reference is in Movies/Case1-gain-ref.MRC. Have fun.

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2. Unaligned movies of alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 2

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

1294

Image size:

(3838, 3710)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(1.14, 1.14)

Details:

Unaligned and non-gain corrected, 40-frame movies (K2 counting mode) were collected with EPU using a Titan Krios operating at 300 kV (LMB Krios I). The exposure was at 32.6 e/A^2) with a defocus range of -2.8 to -1.5 um. Micrographs were manually picked in relion using start-end helical picking. Gain reference is in Movies/Case2-gain-ref.MRC. Have fun twice.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

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3. Unaligned movies of alpha-synuclein filament seeded in vitro by filaments purified from Multiple Systems Atrophy Case 5

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

1265

Image size:

(3838, 3710)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(1.14, 1.14)

Details:

Unaligned and non-gain corrected, 40-frame movies (K2 counting mode) were collected with EPU using a Titan Krios operating at 300 kV (LMB Krios I). The exposure was at 37.5 e/A^2) with a defocus range of -2.8 to -1.5 um. Micrographs were manually picked in relion using start-end helical picking. Gain reference is in Movies/Case5-gain-ref.MRC. Have fun thrice.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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4. Type 1A particles after Bayesian polishing

Category:

picked particles - single frame - processed

Image format:

MRCS

No. of images or tilt series:

67619

Image size:

(256, 256)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.14, 1.14)

Details:

Polished particles for Type1A

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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5. Type 2A particles after Bayesian polishing

Category:

picked particles - single frame - processed

Image format:

MRCS

No. of images or tilt series:

52502

Image size:

(256, 256)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.14, 1.14)

Details:

Polished particles for Type 2A

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

6. Type 1B particles after Bayesian polishing

Category:

picked particles - single frame - processed

Image format:

MRCS

No. of images or tilt series:

33479

Image size:

(256, 256)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.1, 1.1)

Details:

Polished particles for Type 1B

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

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It is possible to download files by specifying the file list with rsync command, etc.

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7. Type 2B particles after Bayesian polishing

Category:

picked particles - single frame - processed

Image format:

MRCS

No. of images or tilt series:

87092

Image size:

(256, 256)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.1, 1.1)

Details:

Polished particles for Type 2B

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

8. Type 2AB particles after Bayesian polishing

Category:

picked particles - single frame - processed

Image format:

MRCS

No. of images or tilt series:

57358

Image size:

(256, 256)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.1, 1.1)

Details:

Polished particles for Type 2AB

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

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9. Type 3 particles after Bayesian polishing

Category:

picked particles - single frame - processed

Image format:

MRCS

No. of images or tilt series:

71131

Image size:

(256, 256)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.14, 1.14)

Details:

Polished particles for Type 3

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

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