EMPIAR-10368 - Human delta protocadherin 1 full ectodomains on membranes, tomogram 2 [multiple data sets in TIFF, JPEG and MRC formats]

EMPIAR-10368

Human delta protocadherin 1 full ectodomains on membranes, tomogram 2 [multiple data sets in TIFF, JPEG and MRC formats]

Publication:

Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered δ-Protocadherins

Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L

Cell reports 30 (2020) 2655-2671.e7

PMID: 32101743

DOI: 10.1016/j.celrep.2020.02.003

Related EMDB entry:

EMD-21189

Deposited:

2020-01-08

Released:

2020-10-09

Last modified:

2022-02-07

Imageset size:

247.24 GB

Imageset DOI:

10.6019/EMPIAR-10368

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe
micrographs - single frame
tilt series

Image Sets

1. K2 tilt-series frames

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(1.836, 1.836)

Details:

TIF-compressed tilt image frames.

Files:

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2. Whole-frame aligned tilt images

Category:

micrographs - single frame

Image format:

JPEG

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(1.836, 1.836)

Details:

Whole-frame aligned tilt images using Motioncor2 along with all other magnification images from the collection. The images were converted to jpg for internal long-term storage purposes. The jpgs were compressed with loss at 75% quality.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. Appion-Protomo tilt-series alignments

Category:

tilt series

Image format:

MRC

No. of images or tilt series:

Image size:

(3710, 3838)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.836, 1.836)

Details:

Includes a full tilt-series alignment run for the published tilt-series, along with several other tilt-series from the same collection session.
To view properly, navigate to the protomo_alignments folder in Appion-Protomo.

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modeling and machine learning.

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Lee CS, Grba DN, Wright JJ, Ivanov BS, Hirst J. (2025)

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