EMPIAR-10016 - Yeast 80S Ribosome - tRNA- Kozak mRNA complexes, Frealign Input Particle Stack [stack of 86866 particles in MRC format]

EMPIAR-10016

Yeast 80S Ribosome - tRNA- Kozak mRNA complexes, Frealign Input Particle Stack [stack of 86866 particles in MRC format]

Publication:

Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations.

Svidritskiy E, Brilot AF, Koh CS, Grigorieff N, Korostelev AA

Structure 22 (2014) 1210-1218

PMID: 25043550

DOI: doi:10.1016/j.str.2014.06.003

Related EMDB entry:

EMD-5977 EMD-5976

Deposited:

2014-06-04

Released:

2014-11-06

Last modified:

2016-03-17

Imageset size:

42.01 GB

Imageset DOI:

10.6019/EMPIAR-10016

Experimental metadata:

Download xml json

Version history:

2015-10-28

REL

Restructured the entry directory to have "data" and ".private".

2016-03-17

REL

Added Frealign parameter files that correspond to the classes of the deposited data.

Contains:

picked particles - multiframe - processed

Image Sets

1. Frealign input particle stack

Category:

picked particles - multiframe - processed

Image format:

MRC

No. of images or tilt series:

86866

Image size:

(360, 360)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.05, 1.05)

Details:

Processing of raw images: Normalized in Imagic (normvar, whole image average=0, sigma=10). Originally the data was classified into five classes. The five Frealign parameter files that correspond to these classes can be found in "parfiles" directory.

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Talks and Tutorials

EMPIAR Quick tour

Statistics

Publications

Re-use case study

EMPIAR in the news

Claim entries to your ORCiD

COVID-19 Data Portal

EMDB

PDBe

BioImage Archive

EMNavigator@PDBj

PDBj

RCSB@PDBj

EMDataResoruce@RCSB,EMDB,NCMI

Citations

Small LEA proteins mitigate air-water interface damage to fragile cryo-EM samples during plunge freezing.

Abe KM, Li G, He Q, Grant T, Lim CJ. (2024)

Outer membrane protein assembly mediated by BAM-SurA complexes.

Fenn KL, Horne JE, Crossley JA, Böhringer N, Horne RJ, Schäberle TF, Calabrese AN, Radford SE, Ranson NA. (2024)

Ubiquitinated histone H2B as gatekeeper of the nucleosome acidic patch.

Hicks CW, Rahman S, Gloor SL, Fields JK, Husby NL, Vaidya A, Maier KE, Morgan M, Keogh MC, Wolberger C. (2024)

Molecular recognition of an odorant by the murine trace amine-associated receptor TAAR7f.

Gusach A, Lee Y, Khoshgrudi AN, Mukhaleva E, Ma N, Koers EJ, Chen Q, Edwards PC, Huang F, Kim J, Mancia F, Veprintsev DB, Vaidehi N, Weyand SN, Tate CG. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Kofler L, Grundmann L, Gerhalter M, Prattes M, Merl-Pham J, Zisser G, Grishkovskaya I, Hodirnau VV, Vareka M, Breinbauer R, Hauck SM, Haselbach D, Bergler H. (2024)

See all citations

Protein Data Bank Japan News

[2024-12-18]

506 new PDB entries have been released on 2024-12-18.

[2024-11-28]

[wwPDB] Access SDF/MOL formatted CCD files from the PDB archive

[2024-11-01]

A new portal integrating genome variants and protein structures has released

[2024-10-30]

[wwPDB] Deprecation of FTP File Download Protocol on November 1, 2024

[2024-10-25]

PDBj luncheon seminar at APBJC 2024