Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2018-01-17 |  |
Serial Block Face Scanning Electron Micrscopy dataset of the optic lobe from an adult locust [100 micrographs in TIFF format] | Cocks ET [DOI: 10.1111/jmi.12676] |
3.4 GB | — |
| 2020-12-09 |  |
TEM images of a Zebrafish hindbrain cells containing Toxoplasma gondii tachizoites [multiple data sets in TIFF format] | Domart MC, Collinson L [Pubmed: 32461265] [DOI: 10.1242/dmm.043091] |
3.4 GB | — |
| 2024-05-14 |  |
Cryo-electron tomography of keyhole limpet hemocyanin [41 multi-frame micrographs composed of 168 frames each in EER format] | Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr. EE, Drulyte I [Pubmed: 38512070] [DOI: 10.1107/S2059798324001840] |
3.6 GB | — |
| 2021-03-05 |  |
Fluorescent Au as Fiducials for SXT and SIM Correlation [700 tilt series in MRC format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 3.6 GB | — |
| 2016-06-28 |  |
Designer nanoscale DNA assemblies programmed from the top down [50 micrographs in MRC format] | Veneziano R, Ratanalert S, Zhang K, Zhang F, Yan H, Chiu W, Bathe M [Pubmed: 27229143] [DOI: 10.1126/science.aaf4388] |
3.7 GB | 22.0 Å |
| 2018-01-24 |  |
Tilt-series of e. coli carrying empty ple6 plasmid induced with 20 uM IPTG [4 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
3.8 GB | — |
| 2022-02-25 |  |
CryoEM reconstruction of membrane-bound ESCRT-III filament composed of CHMP1B only [stack of 9661 particles in MRCS format] | Nguyen HC, Talledge N, McCullough J, Sharma A, Moss FR, Iwasa JH, Vershinin MD, Sundquist WI, Frost A [Pubmed: 32251413] [DOI: 10.1038/s41594-020-0404-x] |
3.8 GB | 6.2 Å |
| 2020-05-14 |  |
Three-dimensional ultrastructure of Plasmodium falciparum throughout cytokinesis [multiple data sets in MRC and TIFF formats] | Rudlaff RM, Kraemer S, Marshman J, Dvorin JD [Pubmed: 32511279] [DOI: 10.1371/journal.ppat.1008587] |
3.9 GB | — |
| 2023-06-20 |  |
Cryo-EPty SPA at CSA of 4.83 mrad [22 micrographs in MRC format] | Pei X, Zhou L, Huang C, Boyce M, Kim JS, Liberti E, Hu Y, Sasaki T, Nellist PD, Zhang P, Stuart DI, Kirkland AI, Wang P [Pubmed: 37230988] [DOI: 10.1038/s41467-023-38268-0] |
3.9 GB | 18.6 Å |
| 2020-11-20 |  |
Cryo-ET of actin bundles induced by full length vinculin [2 tilt series in MRC format] | Ohad Medalia OM [Pubmed: 33185186] [DOI: 10.7554/eLife.53990] |
4.0 GB | 14.2 Å |
| 2020-03-23 |  |
Micrographs of E. coli 70S ribosomes collected at 100 keV using a hybrid pixel direct electron detector [127 multi-frame micrographs composed of 32 frames each in MRCS format] | Naydenova K, McMullan G, Peet MJ, Lee Y, Edwards PC, Chen S, Leahy E, Scotcher S, Henderson R, Russo CJ [Pubmed: 31709064] [DOI: 10.1107/S2052252519012612] |
4.0 GB | 7.0 Å |
| 2016-06-20 |  |
Lambda excision HJ intermediate [stack of 66033 particles in MRC format] | Laxmikanthan G, Xu C, Brilot AF, Warren D, Steele L, Seah N, Tong W, Grigorieff N, Landy A, Van Duyne G [Pubmed: 27223329] [DOI: 10.7554/elife.14313] |
4.0 GB | 11.0 Å |
| 2022-01-07 |  |
Cryo-electron tomography of rod outer segments in wild type mice acquired conventionally with defocus [2 reconstructed volumes in MRC format] | Poege M, Mahamid J, Imanishi SS, Plitzko JM, Palczewski K, Baumeister W [Pubmed: 34931611] [DOI: 10.7554/eLife.72817] |
4.1 GB | 19.3 Å |
| 2015-02-26 |  |
VipA/VipB, sheath of the bacterial type IV secretion system, micrographs for helical reconstruction taken on a K2 detector [77 micrographs in MRC format] | Kudryashev M, Wang R, Brackmann M, Scherer S, Maier T, DiMaio F, Baker D, Stahlberg H, Egelman EH, Basler M [Pubmed: 25723169] [DOI: 10.1016/j.cell.2015.01.037] |
4.1 GB | 3.5 Å |
| 2022-03-15 |  |
Seven benchmark datasets of instance segmentation of mitochondria: 6 diverse volume EM + 1 TEM (100 images) datasets [multiple data sets in TIFF format] | Narayan K, Conrad RW | 4.1 GB | — |
| 2022-05-31 |  |
FIB-SEM of U2OS cell at leading edge of a wound assay, LPA stimulated, polarized [1798 multi-frame micrographs composed of 1 frames each in TIFF format] | Costa J, Pinto A, Machado P | 4.1 GB | — |
| 2024-11-20 |  |
Cryo electron tomography of Rhinovirus 2-infected cos-7 cells [1 reconstructed volumes in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 4.2 GB | 4.7 - 7.1 Å |
| 2022-10-28 |  |
Chlamydomonas Cryo-Slice and View on Thermo Scientific Helios 5 Hydra PFIB [477 micrographs in TIFF format] | Kelley R, Khavnekar S, Wietrzynski W, Plitzko J, Kotecha A | 4.4 GB | — |
| 2025-07-08 |  |
IsoVEM: Accurate and Robust Isotropic Reconstruction for Volume Electron Microscopy Using a Video Transformer [158 micrographs in TIFF format] | He J, Zhang Y, Sun WH, Li A, Li XX, Liu GL, Yang G, Sun F | 4.4 GB | — |
| 2023-02-17 |  |
Cryo serial FIB/SEM of Saccharomyces cerevisiae [109 micrographs in TIFF format] | Dumoux M, Glen T, Smith JLR, Ho EML, Perdigão LMA, Pennington A, Klumpe S, Yee NBY, Farmer DA, Lai PYA, Bowles W, Kelley R, Plitzko JM, Wu L, Basham M, Clare DK, Siebert CA, Darrow MC, Naismith JH, Grange M [Pubmed: 36805107] [DOI: 10.7554/elife.83623] |
4.8 GB | — |
| 2021-03-05 |  |
Lipid Droplets as Fiducials for SXT and SIM Correlation [700 tilt series in MRC format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 4.8 GB | — |
| 2024-11-21 |  |
Cryo electron tomography of Rhinovirus 2-infected cos-7 cells with the inhibitor wiskostatin [2 tilt series in MRC format] | Ishemgulova A, Mukhamedova L, Trebichalská Z, Füzik T | 4.9 GB | 4.7 - 7.1 Å |
| 2018-01-24 |  |
Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB hyper-overexpressed by induction with 1uM IPTG [5 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
5.0 GB | — |
| 2025-01-23 |  |
In situ cryo-electron tomograms #1-#2 of human brain organoid from SOLIST procedure. [multiple data sets in MRC format] | Dung NHT, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kelebic N, Coscia F, Erdmann PS [Pubmed: 39271806] [DOI: 10.1038/s41592-024-02384-6] |
5.1 GB | — |
| 2025-01-23 |  |
In situ cryo-electron tomograms #1-#2 of native mouse corpus callosum from SOLIST procedure. [2 tilt series in MRC format] | Dung NHT, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kelebic N, Coscia F, Erdmann PS [Pubmed: 39271806] [DOI: 10.1038/s41592-024-02384-6] |
5.1 GB | — |
