Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2020-10-16 |  |
E. coli 50S ribosome bound to compound 47 [2568 multi-frame micrographs composed of 53 frames each in TIFF format] | Pellegrino J, Lee DJ, Fraser JS, Seiple IB [Pubmed: 32968273] [DOI: 10.1038/s41586-020-2761-3] |
947.9 GB | 2.5 Å |
| 2020-10-16 |  |
E. coli 50S ribosome bound to compounds 46 and VS1 [1095 multi-frame micrographs composed of 53 frames each in TIFF format] | Pellegrino J, Lee DJ, Fraser JS, Seiple IB [Pubmed: 32968273] [DOI: 10.1038/s41586-020-2761-3] |
403.8 GB | 2.7 Å |
| 2023-06-29 |  |
E. coli 50S ribosome bound to compound SAB002 [multiple data sets in MRC and TIFF formats] | Pellegrino J, Seiple IB, Fraser JS, Lee DJ | 2.4 TB | 2.27 Å |
| 2023-06-29 |  |
E. coli 50S ribosome bound to streptogramin A analog 3142 [multiple data sets in MRC and TIFF formats] | Pellegrino J, Seiple IB, Fraser JS, Lee DJ | 5.3 TB | 1.91 Å |
| 2023-06-29 |  |
E. coli 50S ribosome bound to streptogramin A analog 3146 [multiple data sets in MRC and TIFF formats] | Pellegrino J, Seiple IB, Fraser JS, Lee DJ | 2.1 TB | 2.38 Å |
| 2023-06-30 |  |
E. coli 50S ribosome bound to compound streptogramin A analog 3336 [multiple data sets in MRC and TIFF formats] | Pellegrino J, Seiple IB, Fraser JS, Lee DJ | 2.4 TB | 2.09 Å |
| 2023-06-30 |  |
E. coli 50S ribosome bound to SLC09 [multiple data sets in MRC and TIFF formats] | Pellegrino J, Seiple IB, Fraser JS, Lee DJ | 1.8 TB | 2.53 Å |
| 2023-06-30 |  |
E. coli 50S ribosome bound to tiamulin and VS1 [multiple data sets in MRC and TIFF formats] | Pellegrino J, Seiple IB, Fraser JS, Lee DJ | 2.0 TB | 2.13 Å |
| 2023-01-03 |  |
Movies of apoferritin collected at different dose rates on the Direct Electron Apollo direct detector - 15 eps [972 multi-frame micrographs composed of 76 frames each in TIFF format] | Peng R, Fu X, Mendez JH, Randolph PS, Bammes BE, Stagg SM [Pubmed: 36578473] [DOI: 10.1016/j.yjsbx.2022.100080] |
297.2 GB | — |
| 2023-01-18 |  |
Movies of apoferritin collected at different dose rates on the Direct Electron Apollo direct detector - 30 eps [1478 multi-frame micrographs composed of 40 frames each in TIFF format] | Peng R, Fu X, Mendez JH, Randolph PS, Bammes BE, Stagg SM [Pubmed: 36578473] [DOI: 10.1016/j.yjsbx.2022.100080] |
348.5 GB | — |
| 2023-01-17 |  |
Movies of apoferritin collected at different dose rates on the Direct Electron Apollo direct detector - 60 eps [869 multi-frame micrographs composed of 20 frames each in TIFF format] | Peng R, Fu X, Mendez JH, Randolph PS, Bammes BE, Stagg SM [Pubmed: 36578473] [DOI: 10.1016/j.yjsbx.2022.100080] |
154.5 GB | 1.68 Å |
| 2024-03-20 |  |
Directed evolution of and structural insights into antibody-mediated disruption of a stable receptor-ligand complex [592 micrographs in MRC format] | Pennington LF, Gasser P, Kleinboelting S, Zhang C, Skiniotis G, Eggel A, Jardetzky TS [Pubmed: 34862384] [DOI: 10.1038/s41467-021-27397-z] |
52.0 GB | 7.29 Å |
| 2021-11-08 |  |
Monitoring reversion of hepatitis C virus-induced cellular alterations by Direct-Acting Antivirals using cryo Soft X-ray Tomography and Infrared Microscopy [7 reconstructed volumes in TIFF format] | Perez-Berna AJ, Benseny-Cases N, Rodríguez MJ, Valcarcel R, Carrascosa JL, Gastaminzab P, Pereiroa E [Pubmed: 34726165] [DOI: 10.1107/S2059798321009955] |
260.2 MB | — |
| 2023-08-20 |  |
The conformational cycle of prestin underlies outer-hair cell electromotility [6796 multi-frame micrographs composed of 40 frames each in TIFF format] | Perozo E [Pubmed: 34695838] [DOI: 10.1038/s41586-021-04152-4] |
3.1 TB | 3.3 Å |
| 2020-11-13 |  |
Single particle cryoEM of Streptococcus thermophilus SHP pheromone receptor Rgg3 in complex with SHP3 [1464 multi-frame micrographs composed of 40 frames each in MRC format] | Petrou VI, Capodagli GC, Kaelber JT, Neiditch MB [Pubmed: 32907945] [DOI: 10.1073/pnas.2008427117] |
3.0 TB | 2.95 Å |
| 2021-11-10 |  |
Structural mechanism of GTPase-powered ribosome-tRNA movement [multiple data sets in MRC and MRCS formats] | Petrychenko V, Peng B-Z, Schwarzer AP, Peske F, Rodnina MV, Fischer N [Pubmed: 34635670] [DOI: 10.1038/s41467-021-26133-x] |
987.5 GB | 2.35 - 9.5 Å |
| 2024-03-18 |  |
Unseeded Aβ(1-40) amyloid fibrils [4628 multi-frame micrographs composed of 918 frames each in EER format] | Pfeiffer PB, Schmidt M, Fändrich M [Pubmed: 38158175] [DOI: 10.1016/j.jmb.2023.168422] |
1.9 TB | 2.59 - 2.73 Å |
| 2024-03-18 |  |
Seeded Aβ(1-40) amyloid fibril [3018 multi-frame micrographs composed of 40 frames each in TIFF format] | Pfeiffer PB, Schmidt M, Fändrich M [Pubmed: 38158175] [DOI: 10.1016/j.jmb.2023.168422] |
550.2 GB | 2.97 Å |
| 2022-04-19 |  |
Atomic structure of Lanreotide nanotubes revealed by cryo-EM [stack of 631121 particles in MRCS format] | Pieri L, Wang F, Bressanelli S, Egelman EH, Paternostre M [Pubmed: 35042822] [DOI: 10.1073/pnas.2120346119] |
362.5 GB | 2.46 Å |
| 2018-05-30 |  |
Structure of a pre-catalytic spliceosome [stack of 327490 particles in MRCS format] | Plaschka C, Lin PC, Nagai K, Nakane T, Kimanius D, Lindahl E, Scheres SHW [Pubmed: 28530653] [DOI: 10.1038/nature22799] |
126.5 GB | 3.6 - 17.2 Å |
| 2023-02-01 |  |
Mycobacterium phage Che8 [1203 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
763.1 GB | 2.5 Å |
| 2023-03-02 |  |
Gordonia phage Ziko [5058 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
1.4 TB | 2.6 Å |
| 2023-02-01 |  |
Mycobacterium phage Bobi [1915 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
1.2 TB | 2.5 Å |
| 2023-03-02 |  |
Mycobacterium phage Cain [4638 multi-frame micrographs composed of 50 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
1.5 TB | 2.9 Å |
| 2023-02-27 |  |
Gordonia phage Cozz [2799 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
759.4 GB | 2.6 Å |
