Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-09-26 |  |
Single particle cryo-EM dataset of human nucleolar and nuclear pre-60S assembly intermediates [multiple data sets in TIFF and MRCS formats] | Vanden Broeck A, Klinge S [Pubmed: 37410842] [DOI: 10.1126/science.adh3892] EMD-29104 EMD-29252 EMD-29105 EMD-29253 EMD-29106 EMD-29254 EMD-29107 EMD-29255 EMD-29108 EMD-29256 EMD-29109 EMD-29257 EMD-29110 EMD-29258 EMD-29111 EMD-29259 EMD-29112 EMD-29260 EMD-29113 EMD-29261 EMD-29114 EMD-29262 EMD-29115 EMD-29263 EMD-29130 EMD-29131 EMD-29132 EMD-29133 EMD-29134 EMD-29135 EMD-29136 EMD-29137 EMD-29138 EMD-29139 EMD-29140 EMD-29141 EMD-29142 EMD-29128 EMD-29129 EMD-29143 EMD-29144 EMD-29145 EMD-29146 EMD-29147 EMD-29148 EMD-29149 EMD-29150 EMD-29151 EMD-29152 EMD-29153 EMD-29154 EMD-29155 EMD-29156 EMD-29157 EMD-29158 EMD-29159 EMD-29160 EMD-29161 EMD-29162 EMD-29163 EMD-29164 EMD-29165 EMD-29166 EMD-29167 EMD-29168 EMD-29169 EMD-29170 EMD-29171 EMD-29173 EMD-29174 EMD-29175 EMD-29176 EMD-29177 EMD-29178 EMD-29179 EMD-29180 EMD-29181 EMD-29182 EMD-29183 EMD-29184 EMD-29185 EMD-29186 EMD-29187 EMD-29188 EMD-29189 EMD-29192 EMD-29194 EMD-29193 EMD-29116 EMD-29265 EMD-29117 EMD-29266 EMD-29118 EMD-29267 EMD-29119 EMD-29268 EMD-29120 EMD-29269 EMD-29121 EMD-29271 EMD-29122 EMD-29272 EMD-29123 EMD-29273 EMD-29124 EMD-29274 EMD-29125 EMD-29275 EMD-29126 EMD-29276 EMD-29127 EMD-29277 EMD-29195 EMD-29196 EMD-29197 EMD-29198 EMD-29199 EMD-29200 EMD-29201 EMD-29202 EMD-29204 EMD-29205 EMD-29206 |
140.5 TB | 2.33 - 3.75 Å |
| 2021-10-11 |  |
Nucleolar maturation of the human small subunit processome [multiple data sets in TIFF and MRC formats] | Singh S, Vanden Broeck A, Klinge S [Pubmed: 34516797] [DOI: 10.1126/science.abj5338] EMD-23939 EMD-23936 EMD-24149 EMD-24150 EMD-24151 EMD-24152 EMD-24153 EMD-24154 EMD-24155 EMD-24156 EMD-24157 EMD-24158 EMD-24159 EMD-24160 EMD-24161 EMD-23940 EMD-23938 EMD-24162 EMD-24163 EMD-24164 EMD-24165 EMD-24166 EMD-24167 EMD-24168 EMD-24169 EMD-24170 EMD-24171 EMD-24172 EMD-24173 EMD-24174 EMD-24175 EMD-24176 |
74.6 TB | 2.6 - 6.37 Å |
| 2023-02-17 |  |
Principles of mitoribosomal small subunit assembly in eukaryotes [multiple data sets in TIFF format] | Harper NJ, Burnside C, Klinge S [Pubmed: 36482135] [DOI: 10.1038/s41586-022-05621-0] |
73.6 TB | 2.36 - 3.8 Å |
| 2023-12-18 |  |
cA3-bound TIR-SAVED [3907 multi-frame micrographs composed of 50 frames each in MRC format] | Hogrel G, Guild A, Graham S, Rickman H, Grüschow S, Bertrand Q, Spagnolo L [Pubmed: 35948638] [DOI: 10.1038/s41586-022-05070-9] |
47.7 TB | 3.8 Å |
| 2021-10-22 |  |
Single particle cryo-EM of human mitochondrial ribosomes from Pde12 KO cells [46109 multi-frame micrographs composed of 39 frames each in TIFF format] | Desai N, Yang H, Chandrasekaran V, Kazi R, Minczuk M, Ramakrishnan V [Pubmed: 33243891] [DOI: 10.1126/science.abc7782] |
45.7 TB | 4.4 Å |
| 2020-11-27 |  |
Micrograph frames from 110 internal SEMC/NYSBC test datasets used for Topaz-Denoise model generation & analysis [1000000 micrographs in MRCS format] | Bepler T, Kelley K, Noble AJ, Berger B [Pubmed: 33060581] [DOI: 10.1038/s41467-020-18952-1] |
33.9 TB | 2.9 - 12.54 Å |
| 2023-11-07 |  |
A molecular network of conserved factors keeps ribosomes dormant in the egg [multiple data sets in MRC, MRCS and TIFF formats] | Leesch F, Lorenzo-Orts L, Grishkovskaya I, Kandolf S, Belacic K, Meinhart A, Haselbach D, Pauli A [Pubmed: 36653451] [DOI: 10.1038/s41586-022-05623-y] |
32.5 TB | 2.3 - 3.2 Å |
| 2022-07-22 |  |
Structural conservation among variants of the SARS-CoV-2 spike postfusion bundle [multiple data sets in TIFF format] | Yang K, Brunger AT [Pubmed: 36940324] [DOI: 10.1073/pnas.2300360120] |
32.4 TB | 2.09 - 2.52 Å |
| 2024-04-09 |  |
In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling [multiple data sets in EER and MRC formats] | Kelley R, Khavnekar S, Zhang X, Obr M, Chakraborty S, Koh AF, Heebner J, Righetto R, Waltz F, McCafferty C, Van den Hoek H, Wietrzynski W, Van Der Stappen P, Michael A, Van Dorst S, Tagiltsev G, Beck F, Zhong E, Wan W, Briggs J, Plitzko J, Engel B, Kotecha A [Pubmed: 37613825] [DOI: 10.1093/micmic/ozad067.480] |
27.7 TB | — |
| 2021-05-07 |  |
The cryo-EM structure of vesivirus 2117 highlights functional variations in entry pathways for viruses in different clades of the vesivirus genus. [2000 multi-frame micrographs composed of 50 frames each in MRC format] | Sutherland H, Conley MJ, Emmott E, Streetley J, Goodfellow IG, Bhella D [Pubmed: 33853966] [DOI: 10.1128/JVI.00282-21] |
24.4 TB | 3.65 Å |
| 2023-02-27 |  |
Cryo-EM micrographs of full-length human BIRC6 dimer with a bound DIABLO (SMAC) homodimer [multiple data sets in EER format] | Ehrmann JF, Grabarczyk DB, Clausen T [Pubmed: 36758105] [DOI: 10.1126/science.ade8873] |
24.2 TB | 7.2 Å |
| 2020-11-27 |  |
Movies of Nsp7-Nsp8-Nsp12 SARS-CoV2 RNA-dependent RNA polymerase in complex with template:primer dsRNA and favipiravir-RTP [63977 multi-frame micrographs composed of 24 frames each in MRCS format] | Naydenova K, Muir KW, Wu LF, Zhang Z, Coscia F, Peet MJ, Castro-Hartmann P, Qian P, Sader K, Dent K, Kimanius D, Sutherland JD, Löwe J, Barford D, Russo CJ [Pubmed: 33526596] [DOI: 10.1073/pnas.2021946118] |
23.9 TB | 2.5 Å |
| 2023-10-13 |  |
Single-particle cryo-EM of APC/C-CDH1-UBE2C-UBE2S-Ubiquitin-CyclinB-NTD [25837 multi-frame micrographs composed of 39 frames each in TIFF format] | Bodrug T, Welsh KA, Bolhuis DL, Paulаkonis E, Martinez-Chacin RC, Liu B, Pinkin N, Bonacci T, Cui L, Xu P, Roscow O, Amann SJ, Grishkovskaya I, Emanuele MJ, Harrison JS, Steimel JP, Hahn KM, Zhang W, Zhong ED, Haselbach D, Brown NG [Pubmed: 37735619] [DOI: 10.1038/s41594-023-01105-5] |
22.8 TB | 3.5 Å |
| 2024-04-07 |  |
Cryo-EM of BtCoV-HKU5 5' proximal stem-loop 5 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
22.3 TB | 5.9 - 8.0 Å |
| 2022-03-21 |  |
CryoEM Structure of mGlu2 - Gi Complex [45341 multi-frame micrographs composed of 50 frames each in TIFF format] | Seven AB, Barros-Alvarez X, Skiniotis G [Pubmed: 34194039] [DOI: 10.1038/s41586-021-03680-3] |
21.6 TB | 3.2 Å |
| 2023-06-05 |  |
Cryo electron microscopy of Mce1 transporter from Mycobacterium smegmatis [multiple data sets in TIFF format] | Chen J, Bhabha G, Ekiert D [Pubmed: 37495693] [DOI: 10.1038/s41586-023-06366-0] |
20.9 TB | 2.71 - 3.19 Å |
| 2024-04-07 |  |
Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 with SL6 extended and SL5a, SL5b, and SL5c removed [16511 multi-frame micrographs composed of 40 frames each in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
20.2 TB | 7.8 Å |
| 2023-12-11 |  |
Single particle movie data of NAIP5 [36143 multi-frame micrographs composed of 50 frames each in TIFF format] | Cao J, Paidmuddala B, Zhang L [Pubmed: 36604500] [DOI: 10.1038/s41594-022-00889-2] |
19.4 TB | 3.3 - 3.6 Å |
| 2020-12-18 |  |
Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F1-Fo coupling [1 multi-frame micrographs composed of 1 frames each in MRCS format] | Murphy BJ, Klusch N, Langer J, Mills DJ, Yildiz O, Kuehlbrandt W [Pubmed: 31221832] [DOI: 10.1126/science.aaw9128] EMD-4806 EMD-4807 EMD-4856 EMD-4857 EMD-4808 EMD-4809 EMD-4810 EMD-4811 EMD-4812 EMD-4813 EMD-4814 EMD-4815 EMD-4816 EMD-4817 EMD-4818 EMD-4819 EMD-4820 EMD-4821 EMD-4822 EMD-4823 EMD-4824 EMD-4825 EMD-4826 EMD-4827 EMD-4828 EMD-4829 EMD-4830 EMD-4831 EMD-4832 EMD-4833 EMD-4834 EMD-4835 EMD-4836 EMD-4837 EMD-4838 EMD-4839 EMD-4840 EMD-4841 EMD-4842 EMD-4843 EMD-4844 EMD-4845 EMD-4846 EMD-4847 EMD-4848 EMD-4849 EMD-4850 EMD-4851 EMD-4852 EMD-4853 EMD-4854 EMD-4855 EMD-4805 |
19.1 TB | 2.69 - 4.3 Å |
| 2023-10-03 |  |
Single-particle cryo-EM of APC/C-CDH1-UBE2C-Ubiquitin-CyclinB-NTD [25354 multi-frame micrographs composed of 39 frames each in TIFF format] | Bodrug T, Welsh KA, Bolhuis DL, Paulаkonis E, Martinez-Chacin RC, Liu B, Pinkin N, Bonacci T, Cui L, Xu P, Roscow O, Amann SJ, Grishkovskaya I, Emanuele MJ, Harrison JS, Steimel JP, Hahn KM, Zhang W, Zhong ED, Haselbach D, Brown NG [Pubmed: 37735619] [DOI: 10.1038/s41594-023-01105-5] |
19.0 TB | 4.0 Å |
| 2021-02-12 |  |
Atomic resolution structure of apoferritin from Titan Mono/BCorr microscope [43292 multi-frame micrographs composed of 40 frames each in MRC format] | Yip KM, Fischer N, Paknia E, Chari A, Stark H [Pubmed: 33087927] [DOI: 10.1038/s41586-020-2833-4] |
18.7 TB | 1.15 - 1.56 Å |
| 2023-01-18 |  |
Organizing Structural Principles of the Interleukin-17 Ligand-Receptor Axis [multiple data sets in TIFF format] | Caveney NA, Wilson SC, Garcia KC [Pubmed: 35863378] [DOI: 10.1038/s41586-022-05116-y] |
17.7 TB | 2.5 - 4.4 Å |
| 2023-03-16 |  |
HMP1/alpha-catenin binding with actin filaments [multiple data sets in TIFF and MRC formats] | Rangarajan ES, Smith EW, Izard T [Pubmed: 36539037] [DOI: 10.1016/j.jbc.2022.102817] |
16.9 TB | 3.36 Å |
| 2024-04-09 |  |
Structure of the Plasmodium falciparum 20S proteasome complexed with inhibitor TDI-8304 [29421 multi-frame micrographs composed of 75 frames each in TIFF format] | Hsu HC, Li H [Pubmed: 38097652] [DOI: 10.1038/s41467-023-44077-2] |
16.7 TB | 2.18 Å |
| 2022-09-12 |  |
Structures of the Cyanobacterial Phycobilisome in the Light-harvesting and Photoprotected States [multiple data sets in MRC and TIFF formats] | Sauer PV, Dominguez-Martin MA, Kerfeld CA [Pubmed: 36045294] [DOI: 10.1038/s41586-022-05156-4] |
16.7 TB | 2.1 - 3.5 Å |
