Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-07-12 |  |
CryoEM single particle dataset for psNb 2-57 with spike protein [3485 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
1.4 TB | 2.9 Å |
| 2022-07-18 |  |
CryoEM single particle dataset for psNb 1-8 with spike protein [3147 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
1.9 TB | 2.7 Å |
| 2022-07-18 |  |
CryoEM single particle dataset for psNb 1-22 with spike protein [3610 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
1.6 TB | 2.3 Å |
| 2022-07-15 |  |
CryoEM single particle dataset for psNb 1-23 with spike protein [1872 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
802.4 GB | 2.9 Å |
| 2022-07-15 |  |
CryoEM single particle dataset for psNb 2-65 with spike protein [1625 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
932.2 GB | 3.2 Å |
| 2022-07-15 |  |
CryoEM single particle dataset for psNb 2-45 with spike protein [2062 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
873.7 GB | 2.6 Å |
| 2023-06-02 |  |
Cryo-ET tilt series from mouse islets lift-out sample [multiple data sets in TIFF format] | Wu Y, Qin C, Du W, Guo Z, Chen L, Guo Q [Pubmed: 37201639] [DOI: 10.1016/j.jsb.2023.107971] |
16.0 GB | — |
| 2020-04-24 |  |
Mouse heavy-chain apoferritin movies obtained using a Talos Arctica (200 kV) equipped with a K2 [1679 multi-frame micrographs composed of 90 frames each in TIFF format] | Wu M, Lander GC, Herzik MA [Pubmed: 32647824] [DOI: 10.1016/j.yjsbx.2020.100020] |
549.5 GB | 1.75 Å |
| 2020-04-24 |  |
Rabbit muscle aldolase movies obtained using a Talos Arctica (200 kV) equipped with a K2 [3316 multi-frame micrographs composed of 44 frames each in TIFF format] | Wu M, Lander GC, Herzik MA [Pubmed: 32647824] [DOI: 10.1016/j.yjsbx.2020.100020] |
543.3 GB | 2.13 Å |
| 2023-02-01 |  |
Cryo-EM data of alpha-synuclein A53T fibril [2663 micrographs in MRC format] | Wu KP, Huang JYC | 233.8 GB | 3.4 Å |
| 2023-02-22 |  |
Cryo-EM data of alpha-synuclein A53T fibril induced by CaCl2 [1799 micrographs in MRC format] | Wu KP | 158.0 GB | 2.7 Å |
| 2023-06-23 |  |
Unaligned and aligned cryo-EM micrographs of 82-kDa malate synthase G [multiple data sets in TIFF format] | Wu K.-P. [Pubmed: 36997036] [DOI: 10.1016/j.jsb.2023.107958] |
227.3 GB | 2.89 - 4.14 Å |
| 2016-07-06 |  |
Unsupervised single-particle deep classification via statistical manifold learning [multiple data sets in MRC format] | Wu J, Ma YB, Congdon C, Brett B, Chen S, Xu Y, Ouyang Q, Mao Y | 28.2 GB | — |
| 2020-07-21 |  |
Single particle cryo EM dataset of SARS-CoV-2 Spike protein in uncleavable form, which generated a 2.6Å reconstruction of the closed trimer. [9210 multi-frame micrographs composed of 30 frames each in MRC format] | Wrobel AG, Benton DJ, Nans A, Rosenthal PB, Gamblin SJ [Pubmed: 32647346] [DOI: 10.1038/s41594-020-0468-7] |
8.4 TB | 2.6 Å |
| 2023-03-22 |  |
Electron cryo-tomography data on the ER-mitochondria encounter structure in cryo-FIB milled yeast cells [multiple data sets in MRC and TIFF formats] | Wozny MR, Di Luca A, Morado DR, Picco A, Khaddaj R, Campomanes P, Ivanovic L, Hoffmann PC, Miller EA, Vanni S, Kukulski W [Pubmed: 37165187] [DOI: 10.1038/s41586-023-06050-3] |
236.6 GB | — |
| 2015-06-17 |  |
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine [multiple data sets in MRC format] | Wong W, Bai XC, Brown A, Fernandez IS, Hanssen E, Condron M, Tan YH, Baum J, Scheres SHW [Pubmed: 24913268] [DOI: 10.7554/eLife.03080] |
1.2 TB | 3.2 Å |
| 2023-01-03 |  |
Cryo electron tomography of Ca. L. ossiferum [multiple data sets in MRC format] | Wollweber F, Xu J [Pubmed: 36544020] [DOI: 10.1038/s41586-022-05550-y] |
11.6 GB | 11.7 - 24.5 Å |
| 2021-05-16 |  |
Cryo-EM structure of a thermostable encapsulin from T. maritima [2771 multi-frame micrographs composed of 67 frames each in TIFF format] | Wiryaman TI, Toor N [Pubmed: 33953921] [DOI: 10.1107/S2052252521001949] |
1.6 TB | 2.0 Å |
| 2022-09-09 |  |
Cryo-electron microscopy of human exostosin-like 3 (EXTL3) in the presence of UDP [2573 multi-frame micrographs composed of 1 frames each in MRC format] | Wilson LFL, Dendooven T, Hardwick SW, Echevarría-Poza A, Tryfona T, Krogh KBRM, Chirgadze DY, Luisi BF, Logan DT, Mani K, Dupree P [Pubmed: 35676258] [DOI: 10.1038/s41467-022-31048-2] |
669.8 GB | 2.93 Å |
| 2022-09-09 |  |
Cryo-electron microscopy of human exostosin-like 3 (EXTL3) [1626 multi-frame micrographs composed of 70 frames each in MRC format] | Wilson LFL, Dendooven T, Hardwick SW, Echevarría-Poza A, Tryfona T, Krogh KBRM, Chirgadze DY, Luisi BF, Logan DT, Mani K, Dupree P [Pubmed: 35676258] [DOI: 10.1038/s41467-022-31048-2] |
3.5 TB | 2.43 Å |
| 2024-01-15 |  |
Developing retina in zebrafish 55 hpf larval eye. [16 reconstructed volumes in DM3 format] | Wilsch-Bräuninger M | 1.2 GB | — |
| 2022-01-14 |  |
Motion corrected micrographs - purified SINV/EEEV particles and recombinant anti-EEEV Fab (EEEV-143) [3535 micrographs in MRC format] | Williamson LE, Gilliland T, Yadav PK, Binshtein E, Bombardi R, Kose N, Nargi RS, Sutton RE, Durie CL, Armstrong E, Carnahan RH, Walker LM, Kim AS, Fox JM, Diamond MS, Ohi MD, Klimstra WB, Crowe JE [Pubmed: 33301709] [DOI: 10.1016/j.cell.2020.11.011] |
187.5 GB | 8.3 Å |
| 2022-01-12 |  |
Motion corrected micrographs - purified SINV/EEEV particles and recombinant anti-EEEV Fab (EEEV-33) [2111 micrographs in MRC format] | Williamson LE, Gilliland Jr T, Yadav PK, Binshtein E, Bombardi R, Kose N, Nargi RS, Sutton RE, Durie CL, Armstrong E, Carnahan RH, Walker LM, Kim AS, Fox JM, Diamond MS, Ohi MD, Klimstra WB, Crowe Jr JE [Pubmed: 33301709] [DOI: 10.1016/j.cell.2020.11.011] |
111.8 GB | 7.24 Å |
| 2023-04-11 |  |
Cryo-EM micrographs for the Bombyx mori R2 retrotransposon initiating target-primed reverse transcription [16551 multi-frame micrographs composed of 40 frames each in TIFF format] | Wilkinson ME, Zhang F [Pubmed: 37023171] [DOI: 10.1126/science.adg7883] |
2.3 TB | 3.08 Å |
| 2019-08-27 |  |
Yeast postcatalytic spliceosome, two cryoEM data sets at different magnifications [multiple data sets in MRC format] | Wilkinson ME, Nagai K [Pubmed: 31478901] [DOI: 10.1107/S2059798319010519] |
6.3 TB | 3.3 Å |
