Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-02-10 |  |
Cryo-EM structures of Helicobacter pylori vacuolating cytotoxin A (VacA) oligomeric assemblies [10056 multi-frame micrographs composed of 30 frames each in MRC format] | Zhang K, Zhang H, Li S, Pintilie GD, Mou TC, Gao Y, Zhang Q, van den Bedem H, Schmid MF, Au SWN, Chiu W [Pubmed: 30894496] [DOI: 10.1073/pnas.1821959116] |
1.1 TB | 3.2 - 9.9 Å |
| 2021-02-19 |  |
Apoferritin structure at 1.36 angstrom resolution determined from a 300 kV Titan Krios G3i electron microscope with Falcon4 detector [7734 multi-frame micrographs composed of 40 frames each in MRC format] | Zhang K, Pintilie GD, Li S, Schmid MF, Chiu W [Pubmed: 33139928] [DOI: 10.1038/s41422-020-00432-2] |
3.7 TB | 1.36 Å |
| 2021-02-26 |  |
Cryo electron tomography of muscle tissue lamella from mice [1 tilt series in MRC format] | Zhang J, Zhang D, Sun L, Ji G, Huang X, Niu T, Xu J, Ma C, Zhu Y, Gao N, Xu W, Sun F [Pubmed: 34174447] [DOI: 10.1016/j.jsb.2021.107763] |
1.3 GB | — |
| 2021-11-08 |  |
Cryo electron tomography of spinach leaf tissue [1 tilt series in MRC format] | Zhang J, Zhang D, Sun L, Ji G, Huang X, Niu T, Xu J, Ma C, Zhu Y, Gao N, Xu W, Sun F [Pubmed: 34174447] [DOI: 10.1016/j.jsb.2021.107763] |
2.2 GB | — |
| 2023-10-18 |  |
Cryo-EM of the wild-type AtMSL10 in GDN [3828 multi-frame micrographs composed of 48 frames each in MRC format] [3828 multi-frame micrographs composed of 48 frames each in MRC format] | Zhang J, Yuan P [Pubmed: 37805510] [DOI: 10.1038/s41467-023-42117-5] |
3.3 TB | 3.7 Å |
| 2023-10-18 |  |
Cryo-EM of the wild-type AtMSL10 in saposin [2120 multi-frame micrographs composed of 46 frames each in MRC format] [2120 multi-frame micrographs composed of 46 frames each in MRC format] | Zhang J, Yuan P [Pubmed: 37805510] [DOI: 10.1038/s41467-023-42117-5] |
1.8 TB | 3.6 Å |
| 2023-10-18 |  |
Cryo-EM of AtMSL10 K539E [3229 multi-frame micrographs composed of 42 frames each in MRC format] [3229 multi-frame micrographs composed of 42 frames each in MRC format] | Zhang J, Yuan P [Pubmed: 37805510] [DOI: 10.1038/s41467-023-42117-5] |
2.5 TB | 3.7 Å |
| 2023-10-20 |  |
Cryo-EM of AtMSL10 G556V [3647 multi-frame micrographs composed of 42 frames each in MRC format] [3647 multi-frame micrographs composed of 42 frames each in MRC format] | Zhang J, Yuan P [Pubmed: 37805510] [DOI: 10.1038/s41467-023-42117-5] |
2.8 TB | 3.5 Å |
| 2021-11-08 |  |
VHUT-cryo-FIB, a method to fabricate frozen-hydrated lamella of tissue specimen for in situ cryo-electron tomography [13 multi-frame micrographs composed of 30 frames each in TIFF format] | Zhang J [Pubmed: 34174447] [DOI: 10.1016/j.jsb.2021.107763] |
112.1 GB | 18.0 Å |
| 2018-11-23 |  |
Cryo-EM Reconstruction of apo EsCas13d [multiple data sets in MRCS format] | Zhang C, Lyumkis D [Pubmed: 30241607] [DOI: 10.1016/j.cell.2018.09.001] |
66.9 GB | 6.5 Å |
| 2024-03-19 |  |
Unveiling the ultrastructural landscape of extracellular matrix via lift-out cryo-FIBSEM and cryo-ET [multiple data sets in TIFF and MRC formats] | Zens B., Fäßler F., Hansen J.M., Hauschild R., Datler J., Hodirnau V.V., Zheden V., Alanko J., Sixt M., Schur F.K.M. [DOI: 10.1083/jcb.202309125] |
183.0 GB | — |
| 2022-11-11 |  |
Structure of COPII coat - tilt series raw data [6601 multi-frame micrographs composed of 10 frames each in TIFF format] | Zanetti G, Hagen W, Hutchings J [Pubmed: 36468689] [DOI: 10.7554/eLife.83724] |
192.3 GB | 3.8 Å |
| 2020-08-18 |  |
Yeast Tilt Series Collected on Lamella Generated by Fully Automated FIB Milling [1 tilt series in MRC format] | Zachs T, Schertel A, Medeiros J, Weiss GL, Hugener J, Matos J, Pilhofer M [Pubmed: 32149604] [DOI: 10.7554/eLife.52286] |
2.6 GB | 30.0 Å |
| 2022-01-21 |  |
Structural Insights of Transcriptionally Active, Full-Length Androgen Receptor Coactivator Complexes [1958 multi-frame micrographs composed of 50 frames each in MRC format] | Yu X, Yi P [Pubmed: 32668201] [DOI: 10.1016/j.molcel.2020.06.031] |
5.1 TB | 13.0 Å |
| 2022-01-24 |  |
Structural Insights of Transcriptionally Active, Full-Length Androgen Receptor Coactivator Complexes [multiple data sets in MRC and TIFF formats] | Yu X, Yi P [Pubmed: 32668201] [DOI: 10.1016/j.molcel.2020.06.031] |
2.0 TB | 20.0 Å |
| 2019-04-05 |  |
mouse MDA5-dsRNA 10mM ATP Filamemt [2213 micrographs in MRC format] | Yu Q, Qu K, Modis YE [Pubmed: 30449722] [DOI: 10.1016/j.molcel.2018.10.012] |
138.9 GB | 3.87 Å |
| 2019-04-05 |  |
mouse MDA5-dsRNA 2.5-mM AMPPNP Filamemt [471 multi-frame micrographs composed of 75 frames each in MRC format] | Yu Q, Qu K, Modis YE [Pubmed: 30449722] [DOI: 10.1016/j.molcel.2018.10.012] |
1.1 TB | 4.06 Å |
| 2019-04-05 |  |
mouse MDA5-dsRNA filaments [592 multi-frame micrographs composed of 27 frames each in MRC format] | Yu Q, Qu K, Modis YE [Pubmed: 30449722] [DOI: 10.1016/j.molcel.2018.10.012] |
499.5 GB | 4.02 - 4.16 Å |
| 2021-04-14 |  |
mouse MDA5-dsRNA filamemts in complex of 2mM ADP-AlF4 [multiple data sets in MRC format] | Yu Q, Qu K, Modis YE [Pubmed: 30449722] [DOI: 10.1016/j.molcel.2018.10.012] |
195.3 GB | 4.06 Å |
| 2019-04-05 |  |
mouse MDA5-dsRNA Filaments in presence of 1mM AMPPNP [multiple data sets in MRC format] | Yu Q, Qu K, Modis YE [Pubmed: 30449722] [DOI: 10.1016/j.molcel.2018.10.012] |
1.5 TB | 3.68 - 3.93 Å |
| 2021-11-12 |  |
WT MDA5-dsRNA filaments in complex with ADP [4680 multi-frame micrographs composed of 40 frames each in TIFF format] | Yu Q, Modis Y [Pubmed: 34795277] [DOI: 10.1038/s41467-021-27062-5] |
791.8 GB | 3.4 - 3.9 Å |
| 2021-11-12 |  |
Disease variant M854K MDA5-dsRNA filaments in complex with ADP-AlF4 [2177 multi-frame micrographs composed of 60 frames each in TIFF format] | Yu Q, Modis Y [Pubmed: 34795277] [DOI: 10.1038/s41467-021-27062-5] |
2.5 TB | 4.26 - 4.3 Å |
| 2021-11-23 |  |
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ATP [7176 multi-frame micrographs composed of 40 frames each in TIFF format] | Yu Q, Herrero Del Valle A, Singh R, Modis Y [Pubmed: 34795277] [DOI: 10.1038/s41467-021-27062-5] |
1.2 TB | 2.8 Å |
| 2023-07-06 |  |
CryoEM micrographs of slipper limpet (Crepidula fornicata) hemocyanin [856 multi-frame micrographs composed of 30 frames each in MRC format] | Young MT, Pasqualetto G, Clare D [Pubmed: 37347755] [DOI: 10.1371/journal.pone.0287294] |
802.5 GB | 4.7 - 7.0 Å |
| 2020-11-18 |  |
SARS-CoV-2 infection in human adult lung alveolar stem cells [multiple data sets in TIFF format] | Youk J, Kim T, Evans KV, Jeong YI, Hur Y, Hong SP, Kim JH, Yi K, Kim SY, Na KJ, Bleazard T, Kim HM, Fellows M, Mahbubani KT, Saeb-Parsy K, Kim SY, Kim YT, Koh GY, Choi BS, Ju YS, Lee JH [Pubmed: 33142113] [DOI: 10.1016/j.stem.2020.10.004] |
20.8 GB | — |
