Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-10-19 | volume EM dataset of the 5-day-old Mnemiopsis leidyi aboral organ [620 micrographs in TIFF format] | Jokura K [DOI: 10.7554/eLife.108420.1] |
496.4 GB | — | |
| 2025-10-20 | Single particle reconstruction of LGTV TP21 strain [7111 multi-frame micrographs composed of 40 frames each in MRC format] | Bisikalo K [Pubmed: 40827915] [DOI: 10.1128/jvi.00870-25] |
4.0 TB | 3.82 Å | |
| 2025-10-21 | Structural mechanism of RNA-guided RNA editing by the Cas13b-ADAR2 REPAIR complex [multiple data sets in TIFF format] | Ishikawa J., Kato K., Yamashita K., Nishizawa T., Nishimasu H. [Pubmed: 40217120] [DOI: 10.1038/s41594-025-01529-1] |
2.2 TB | 2.59 - 3.71 Å | |
| 2025-10-21 | Cryo-EM structure of Arf1-decorated tubules [12483 multi-frame micrographs composed of 40 frames each in EER format] | Haupt C, Semchonok DA, Daum S, Neudorf SS, Hamdi F, Kastritis P, Stubbs MT, Bacia K [DOI: 10.64898/2026.01.22.700998] |
15.0 TB | 3.1 - 3.79 Å | |
| 2025-10-21 | Single particle cryo-EM of Mycobacterium tuberculosis UvrA and UvrB complexes with DNA [21234 multi-frame micrographs composed of 40 frames each in TIFF format] | Genta M, Chaves-Sanjuan A, Miggiano R [Pubmed: 40210888] [DOI: 10.1038/s41467-025-58670-0] |
7.7 TB | 3.2 - 4.3 Å | |
| 2025-10-22 | GGCX-Anisindione data [9591 micrographs in MRC format] | Wu W, pengfei L | 842.1 GB | 2.82 Å | |
| 2025-10-22 | GGCX-VKO data [8745 micrographs in MRC format] | Wu W, pengfei L | 767.9 GB | 3.04 Å | |
| 2025-10-22 | GGCX-BGP data [7375 micrographs in MRC format] | Wu W, pengfei L | 647.6 GB | 2.62 Å | |
| 2025-10-22 | GGCX-MGP data [1533 micrographs in MRC format] | Wu W, pengfei L | 134.6 GB | 3.1 Å | |
| 2025-10-22 | GGCX-FIXGlaE data [7500 micrographs in MRC format] | Wu W, pengfei L | 688.3 GB | 2.41 Å | |
| 2025-10-22 | Single-particle cryo-electron microscopy of PlPVC1 particle in extended state - raw micrographs [20162 multi-frame micrographs composed of 1602 frames each in EER format] | Marín-Arraiza L., Taylor N.M.I. [DOI: 10.1038/s41467-025-64377-z] |
16.8 TB | — | |
| 2025-10-22 | Single-particle cryo-electron microscopy of PlPVC1 particle in contracted state - raw micrographs [17274 multi-frame micrographs composed of 1494 frames each in EER format] | Marín-Arraiza L., Taylor N.M.I. [Pubmed: 41125615] [DOI: 10.1038/s41467-025-64377-z] |
14.0 TB | 3.1 - 10.0 Å | |
| 2025-10-22 | Cryo-EM reconstruction of the full-length H209N mutant E. coli transmembrane formate transporter FocA [2128 multi-frame micrographs composed of 30 frames each in MRC format] | Tueting C, Janson K, Kyrilis FL, Hamdi F, Kastritis PL [DOI: 10.1038/s41467-025-65159-3] |
923.7 GB | 2.97 Å | |
| 2025-10-22 | Cryo-EM reconstruction of the full-length E. coli transmembrane formate transporter FocA [2128 multi-frame micrographs composed of 30 frames each in MRC format] | Tueting C, Janson K, Kyrilis FL, Hamdi F, Kastritis PL [Pubmed: 41145500] [DOI: 10.1038/s41467-025-65159-3] |
2.0 TB | 2.56 Å | |
| 2025-10-22 | ggcx apo data [10105 micrographs in MRC format] | Wu W, pengfei L | 887.3 GB | 3.46 Å | |
| 2025-10-23 | 3D FIB/SEM Imaging of the Molecular Layer of the Mouse Dentate Gyrus [multiple data sets in TIFF format] | Benoit LB, Pernet-Gallay KPG, Jouneau PHJ | 258.2 GB | — | |
| 2025-10-23 | Cryoelectron microscopy dataset of apo-state mjHSP16.5 (37C) [10020 multi-frame micrographs composed of 70 frames each in TIFF format] | Miller AP, Reichow SL [Pubmed: 40240363] [DOI: 10.1038/s41467-025-58964-3] |
4.0 TB | 2.35 - 2.5 Å | |
| 2025-10-23 | Molecular mechanism of Trypanosoma brucei Aquaporin 2 with melarsoprol [multiple data sets in MRC and MRCS formats] | Weyand SN, Gragera M [DOI: 10.7554/elife.107460.1] |
1.2 TB | 3.2 Å | |
| 2025-10-23 | Structure of a biohybrid photosystem I-platinum nanoparticle solar fuel catalyst [13349 multi-frame micrographs composed of 40 frames each in TIFF format] | Gisriel CJ, Utschig LM [Pubmed: 39496605] [DOI: 10.1038/s41467-024-53476-y] |
5.2 TB | 2.27 Å | |
| 2025-10-23 | Raw micrographs of apoferritin specimen sprayed onto precooled grid coated in liquid ethane [466 multi-frame micrographs composed of 1998 frames each in EER format] | Gusach A, Russo CJ, Sader K [DOI: 10.1073/pnas.2516900122] |
332.0 GB | — | |
| 2025-10-23 | E. coli BAM complex (BamABCDE) in DDM [6063 multi-frame micrographs composed of 47 frames each in TIFF format] | Machin JM, Radford SE, Ranson NA [Pubmed: 37162386] [DOI: 10.1002/anie.202218783] |
723.8 GB | 3.5 Å | |
| 2025-10-25 | Cryo-EM raw micrographs of Retron-displaced free PtuAB complex [15227 multi-frame micrographs composed of 51 frames each in TIFF format] | Wang B, Li H [DOI: 10.1038/s41594-025-01702-6] |
6.7 TB | 3.15 Å | |
| 2025-10-25 | Cryo-EM raw micrographs of the Retron Ec78 complex [20372 multi-frame micrographs composed of 50 frames each in TIFF format] | Wang BW, Li HL [DOI: 10.1038/s41594-025-01702-6] |
8.1 TB | 2.69 - 2.75 Å | |
| 2025-10-26 | CryoEM structure of human LARGE1 bound to UDP-GlcA [8074 multi-frame micrographs composed of 50 frames each in TIFF format] | Spellmon NS, Campbell KC, Joesph SJ [Pubmed: 41073435] [DOI: 10.1038/s41467-025-64080-z] |
3.4 TB | 3.0 Å | |
| 2025-10-27 | E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin) [5053 multi-frame micrographs composed of 29 frames each in TIFF format] | Mattingly JM, Dey D, Zelinskaya N, Dunham CM, Conn GL [Pubmed: 40866347] [DOI: 10.1038/s41467-025-63278-5] |
3.5 TB | 2.2 Å |