Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-10-03 |  |
Single particle cryo-EM dataset of mitochondrial complex I from Mus musculus inhibited by IACS-2858 - 2 [571 multi-frame micrographs composed of 25 frames each in MRC format] | Chung I, Hirst J [Pubmed: 33990335] [DOI: 10.1126/sciadv.abg4000] |
95.9 GB | 3.04 Å |
| 2023-10-03 |  |
Single particle cryo-EM dataset of mitochondrial complex I from Mus musculus inhibited by IACS-2858 - 3 [1593 multi-frame micrographs composed of 1 frames each in MRC format] | Chung I, Hirst J [Pubmed: 33990335] [DOI: 10.1126/sciadv.abg4000] |
259.2 GB | 3.04 Å |
| 2023-02-28 |  |
Single particle cryo-EM dataset of mitochondrial respiratory complex I from Bos taurus in DDM [2370 multi-frame micrographs composed of 24 frames each in MRC format] | Bridges HR, Blaza JN, Yin Z, Chung I, Pollak MN, Hirst J [Pubmed: 36701435] [DOI: 10.1126/science.ade3332] |
352.7 GB | 2.8 - 3.5 Å |
| 2023-02-28 |  |
Single particle cryo-EM dataset of mitochondrial respiratory complex I from Bos taurus in DDM in the presence of IM1761092 [17203 multi-frame micrographs composed of 40 frames each in TIFF format] | Bridges HR, Blaza JN, Yin Z, Chung I, Pollak MN, Hirst J [Pubmed: 36701435] [DOI: 10.1126/science.ade3332] EMD-14251 EMD-14252 EMD-14253 EMD-14254 EMD-14255 EMD-14256 EMD-14257 EMD-14258 EMD-14259 EMD-14260 EMD-14261 EMD-14262 EMD-14263 EMD-14264 EMD-14265 EMD-14266 EMD-14267 EMD-14268 EMD-14269 EMD-14270 EMD-14272 EMD-14273 EMD-14274 EMD-14275 EMD-14276 EMD-14277 EMD-14278 EMD-14279 EMD-14280 EMD-14281 EMD-14282 EMD-14283 EMD-14284 EMD-14285 EMD-14286 EMD-14287 EMD-14288 EMD-14289 EMD-14290 EMD-14291 EMD-14292 EMD-14293 EMD-14294 EMD-14295 EMD-14296 EMD-14297 EMD-14298 EMD-14299 EMD-14300 EMD-14301 EMD-14302 EMD-14303 EMD-14304 EMD-14305 EMD-14306 EMD-14307 EMD-14308 EMD-14309 EMD-14310 EMD-14311 |
6.5 TB | 2.17 - 2.68 Å |
| 2023-10-03 |  |
Single particle cryo-EM dataset of mitochondrial respiratory complex I from Drosophila melanogaster [3082 multi-frame micrographs composed of 40 frames each in MRC format] | Agip AA, Chung I, Hirst J [Pubmed: 36622099] [DOI: 10.7554/eLife.84424] |
621.0 GB | 3.28 - 3.96 Å |
| 2023-10-03 |  |
Single particle cryo-EM dataset of mitochondrial respiratory complex I from Macaca mulatta [2523 multi-frame micrographs composed of 40 frames each in MRC format] | Agip ANA, Hirst J, Blaza JN [Pubmed: 30786232] [DOI: 10.1146/annurev-biophys-052118-115704] |
1.5 TB | 4.1 Å |
| 2020-12-09 |  |
Single particle cryo-EM dataset of mouse heavy chain apoferritin collected on cryoARM300 [3487 multi-frame micrographs composed of 80 frames each in MRC format] | Fislage M, Shkumatov A, Stroobants A, Efremov R [Pubmed: 32695417] [DOI: 10.1107/S2052252520006065] |
486.7 GB | 1.86 Å |
| 2021-06-18 |  |
Single particle cryo-EM dataset of mouse heavy chain apoferritin collected on cryoARM300 with beam-image shift of 7 um [3125 multi-frame micrographs composed of 59 frames each in TIFF format] | Efremov R, Stroobants A [Pubmed: 33950012] [DOI: 10.1107/S2059798321002151] |
695.6 GB | 1.7 Å |
| 2022-07-15 |  |
Single particle cryo-EM dataset of mouse heavy chain apoferritin in laser-melted and revitrified ice [100 multi-frame micrographs composed of 30 frames each in MRC format] | Harder OF, Voss JM, Olshin PK, Drabbels M, Lorenz UJ [Pubmed: 35775987] [DOI: 10.1107/S205979832200554X] |
34.9 GB | 4.25 Å |
| 2022-07-15 |  |
Single particle cryo-EM dataset of mouse heavy chain apoferritin in plunge-frozen vitrified ice [167 multi-frame micrographs composed of 30 frames each in MRC format] | Harder OF, Voss JM, Olshin PK, Drabbels M, Lorenz UJ [Pubmed: 35775987] [DOI: 10.1107/S205979832200554X] |
82.8 GB | 4.57 Å |
| 2023-10-03 |  |
Single particle cryo-EM dataset of mouse mitochondrial complex I in the active state [1235 multi-frame micrographs composed of 25 frames each in MRC format] | Agip AA, Blaza JN, Bridges HR, Hirst J [Pubmed: 33067417] [DOI: 10.1038/s41467-020-18950-3] |
179.6 GB | 3.1 - 3.3 Å |
| 2024-01-16 |  |
Single particle cryo-EM dataset of partially contracted cowpea chlorotic mottle virus in laser-melted and revitrified ice [7902 multi-frame micrographs composed of 40 frames each in EER format] | Harder OF, Barrass SV, Drabbels M, Lorenz UJ [Pubmed: 37704664] [DOI: 10.1038/s41467-023-41444-x] |
3.9 TB | 8.0 Å |
| 2022-11-11 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the cingulate cortex of an individual with Parkinson's disease dementia -synuclein filaments [10874 multi-frame micrographs composed of 42 frames each in TIFF format] | Yang Y, Shi Y, Schweighauser M, Zhang X, Kotecha A, Murzin AG, Garringer HJ, Cullinane PW, Saito Y, Foroud T, Warner TT, Hasegawa K, Vidal R, Murayama S, Revesz T, Ghetti B, Hasegawa M, Lashley T, Scheres SHW, Goedert M [Pubmed: 36108674] [DOI: 10.1038/s41586-022-05319-3] |
1.2 TB | 2.2 Å |
| 2022-01-25 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the frontal cortex of an individual with Alzheimer’s disease of amyloid-β 42 filaments [1762 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang Y, Arseni D, Zhang WJ, Huang M, Lovestam SKA, Schweighauser M, Kotecha A, Murzin AG, Peak-Chew S, Macdonald J, Lavenir I, Garringer HJ, Gelpi E, Newell KL, Kovacs GG, Vidal R, Ghetti B, Falcon B, Scheres SHW, Goedert M [Pubmed: 35025654] [DOI: 10.1126/science.abm7285] |
531.9 GB | 2.5 Å |
| 2021-09-17 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the frontal cortex of an individual with Type I globular glial tauopathy [3561 multi-frame micrographs composed of 54 frames each in TIFF format] | Shi Y, Zhang W, Yang Y, Murzin AG, Falcon B, Kotecha A, van Beers M, Tarutani A, Kametani F, Garringer HJ, Vidal R, Hallinan GI, Lashley T, Saito Y, Murayama S, Yoshida M, Tanaka H, Kakita A, Ikeuchi T, Robinson AC, Mann DMA, Kovacs GG, Revesz T, Ghetti B, Hasegawa M, Goedert M, Scheres SHW [Pubmed: 34588692] [DOI: 10.1038/s41586-021-03911-7] |
671.0 GB | 2.9 - 3.1 Å |
| 2021-09-17 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the frontal cortex of an individual with mutation +16 in intron 10 of MAPT [4805 multi-frame micrographs composed of 52 frames each in TIFF format] | Shi Y, Zhang W, Yang Y, Murzin AG, Falcon B, Kotecha A, van Beers M, Tarutani A, Kametani F, Garringer HJ, Vidal R, Hallinan GI, Lashley T, Saito Y, Murayama S, Yoshida M, Tanaka H, Kakita A, Ikeuchi T, Robinson AC, Mann DMA, Kovacs GG, Revesz T, Ghetti B, Hasegawa M, Goedert M, Scheres SHW [Pubmed: 34588692] [DOI: 10.1038/s41586-021-03911-7] |
911.2 GB | 3.4 Å |
| 2022-01-24 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the frontal cortex of an individual with pathological aging of amyloid-β 42 filaments [1189 multi-frame micrographs composed of 48 frames each in TIFF format] | Yang Y, Arseni D, Zhang W, Huang M, Lovestam SKA, Schweighauser M, Kotecha A, Murzin AG, Peak-Chew SY, Macdonald J, Lavenir I, Garringer HJ, Gelpi E, Newell KL, Kovacs GG, Vidal R, Ghetti B, Falcon B, Scheres SHW, Goedert M [Pubmed: 35025654] [DOI: 10.1126/science.abm7285] |
1.0 TB | 2.8 Å |
| 2021-09-17 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the frontal cortex of an individual with progressive supranuclear palsy [6601 multi-frame micrographs composed of 40 frames each in TIFF format] | Shi Y, Zhang W, Yang Y, Murzin AG, Falcon B, Kotecha A, van Beers M, Tarutani A, Kametani F, Garringer HJ, Vidal R, Hallinan GI, Lashley T, Saito Y, Murayama S, Yoshida M, Tanaka H, Kakita A, Ikeuchi T, Robinson AC, Mann DMA, Kovacs GG, Revesz T, Ghetti B, Hasegawa M, Goedert M, Scheres SHW [Pubmed: 34588692] [DOI: 10.1038/s41586-021-03911-7] |
967.4 GB | 2.7 Å |
| 2021-09-17 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the nucleus accumbens of an individual with argyrophilic grain disease [15227 multi-frame micrographs composed of 35 frames each in TIFF format] | Shi Y, Zhang W, Yang Y, Murzin AG, Falcon B, Kotecha A, van Beers M, Tarutani A, Kametani F, Garringer HJ, Vidal R, Hallinan GI, Lashley T, Saito Y, Murayama S, Yoshida M, Tanaka H, Kakita A, Ikeuchi T, Robinson AC, Mann DMA, Kovacs GG, Revesz T, Ghetti B, Hasegawa M, Goedert M, Scheres SHW [Pubmed: 34588692] [DOI: 10.1038/s41586-021-03911-7] |
2.8 TB | 3.3 Å |
| 2021-09-17 |  |
Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the temporal cortex of an individual with limbic-predominant neuronal inclusion body 4R tauopathy [10615 multi-frame micrographs composed of 1351 frames each in EER format] | Shi Y, Zhang W, Yang Y, Murzin AG, Falcon B, Kotecha A, van Beers M, Tarutani A, Kametani F, Garringer HJ, Vidal R, Hallinan GI, Lashley T, Saito Y, Murayama S, Yoshida M, Tanaka H, Kakita A, Ikeuchi T, Robinson AC, Mann DMA, Kovacs GG, Revesz T, Ghetti B, Hasegawa M, Goedert M, Scheres SHW [Pubmed: 34588692] [DOI: 10.1038/s41586-021-03911-7] |
5.5 TB | 1.9 - 2.5 Å |
| 2022-08-09 |  |
Single particle cryo-EM dataset of the Paranosema locustae ribosome bound to Lso2 [multiple data sets in MRC format] | Ehrenbolger K, Jespersen N, Sharma H, Sokolova YY, Tokarev YS, Vossbrinck CR, Barandun J [Pubmed: 33125369] [DOI: 10.1371/journal.pbio.3000958] |
2.0 TB | 2.9 Å |
| 2022-12-13 |  |
Single particle cryo-EM dataset of the Vairimorpha necatrix 20S proteasome from spores [7240 multi-frame micrographs composed of 30 frames each in TIFF format] | Jespersen N, Ehrenbolger K, Winiger RR, Svedberg D, Vossbrinck CR, Barandun J [Pubmed: 36379934] [DOI: 10.1038/s41467-022-34691-x] |
814.1 GB | 2.77 Å |
| 2022-12-13 |  |
Single particle cryo-EM dataset of the Vairimorpha necatrix 20S proteasome from sporoplasms [3277 multi-frame micrographs composed of 40 frames each in TIFF format] | Jespersen N, Ehrenbolger K, Winiger RR, Svedberg D, Vossbrinck CR, Barandun J [Pubmed: 36379934] [DOI: 10.1038/s41467-022-34691-x] |
453.8 GB | 3.22 Å |
| 2022-12-13 |  |
Single particle cryo-EM dataset of the Vairimorpha necatrix 26S proteasome from sporoplasms [2658 multi-frame micrographs composed of 2700 frames each in EER format] | Jespersen N, Ehrenbolger K, Winiger RR, Svedberg D, Vossbrinck CR, Barandun J [Pubmed: 36379934] [DOI: 10.1038/s41467-022-34691-x] |
3.7 TB | 8.3 Å |
| 2023-12-04 |  |
Single particle cryo-EM dataset of the complex between Corynebacterium glutamicum homohexameric 2-oxoglutarate dehydrogenase OdhA and the FHA-protein inhibitor OdhI [19443 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.6 TB | 2.29 Å |
